Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13106 | 5' | -56.3 | NC_003401.1 | + | 83390 | 0.7 | 0.698541 |
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Target: 5'- gCGGCGGAaguuugugGUUUAugaGCACCACcGGGa -3' miRNA: 3'- -GCCGCCU--------CGAAUuagCGUGGUGcCCC- -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 27596 | 0.7 | 0.688498 |
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Target: 5'- gGGCGG-GCa----CGCGCCagcGCGGGGg -3' miRNA: 3'- gCCGCCuCGaauuaGCGUGG---UGCCCC- -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 55206 | 0.7 | 0.678408 |
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Target: 5'- uGGUuuuGGGUUUGuacaGCGCCGCGGGGg -3' miRNA: 3'- gCCGc--CUCGAAUuag-CGUGGUGCCCC- -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 11763 | 0.71 | 0.658124 |
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Target: 5'- cCGGCGuuGGCUucgcgguggUGGUCGCGCCcuUGGGGg -3' miRNA: 3'- -GCCGCc-UCGA---------AUUAGCGUGGu-GCCCC- -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 10886 | 0.71 | 0.637757 |
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Target: 5'- aGGCGGcGCUUcGUCGCGCUucccUGGGa -3' miRNA: 3'- gCCGCCuCGAAuUAGCGUGGu---GCCCc -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 42292 | 0.71 | 0.617372 |
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Target: 5'- gGGUGGAGCgUGGcCGcCACCA-GGGGa -3' miRNA: 3'- gCCGCCUCGaAUUaGC-GUGGUgCCCC- -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 89815 | 0.72 | 0.566729 |
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Target: 5'- cCGGCGGAGCUgacggUGCGgCGCGGu- -3' miRNA: 3'- -GCCGCCUCGAauua-GCGUgGUGCCcc -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 85712 | 0.73 | 0.526988 |
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Target: 5'- aGGCGGAGCg----CGCACaCGCGcGGa -3' miRNA: 3'- gCCGCCUCGaauuaGCGUG-GUGC-CCc -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 132602 | 0.79 | 0.265399 |
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Target: 5'- cCGGCGGAGCg-----GCACC-CGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCGUGGuGCCCC- -5' |
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| 13106 | 5' | -56.3 | NC_003401.1 | + | 18475 | 1.09 | 0.002481 |
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Target: 5'- uCGGCGGAGCUUAAUCGCACCACGGGGc -3' miRNA: 3'- -GCCGCCUCGAAUUAGCGUGGUGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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