Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 118110 | 0.66 | 0.902884 |
Target: 5'- aCGGUGGGGgccgcgCGcCACCAUGGGc -3' miRNA: 3'- -GCCGCCUCgaauuaGC-GUGGUGCCCc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 119176 | 0.67 | 0.837509 |
Target: 5'- aGGCGaGAGaCUguAUCGCgGuuGCGGGGu -3' miRNA: 3'- gCCGC-CUC-GAauUAGCG-UggUGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 122349 | 0.66 | 0.902884 |
Target: 5'- gGGUGGcAGUgugUAAgucacgCGCGCCGCGGc- -3' miRNA: 3'- gCCGCC-UCGa--AUUa-----GCGUGGUGCCcc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 125612 | 0.66 | 0.868683 |
Target: 5'- gCGG-GGAGUUUGGguuccaGCuCCugGGGGc -3' miRNA: 3'- -GCCgCCUCGAAUUag----CGuGGugCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132413 | 0.66 | 0.875965 |
Target: 5'- -cGCGGGGCcgGGg-GUcCCGCGGGGg -3' miRNA: 3'- gcCGCCUCGaaUUagCGuGGUGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132452 | 0.69 | 0.738072 |
Target: 5'- cCGGCGGcGCccgGcgCGCggGCC-CGGGGg -3' miRNA: 3'- -GCCGCCuCGaa-UuaGCG--UGGuGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132485 | 0.68 | 0.776138 |
Target: 5'- cCGGCGGGGCgga---GgGCCGggagcCGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCgUGGU-----GCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132602 | 0.79 | 0.265399 |
Target: 5'- cCGGCGGAGCg-----GCACC-CGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCGUGGuGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132688 | 0.67 | 0.841577 |
Target: 5'- uCGGCGGGGCccggcgcggggCGCgACCgagggccccgggagaACGGGGa -3' miRNA: 3'- -GCCGCCUCGaauua------GCG-UGG---------------UGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132714 | 0.68 | 0.820784 |
Target: 5'- cCGGCaucgGGAGCcg---CGCGCCGCGGc- -3' miRNA: 3'- -GCCG----CCUCGaauuaGCGUGGUGCCcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home