Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 117927 | 0.67 | 0.861191 |
Target: 5'- gCGGCGGGGUcgcggcgaGGUCaCGCCgaaccgggcGCGGGGg -3' miRNA: 3'- -GCCGCCUCGaa------UUAGcGUGG---------UGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 125612 | 0.66 | 0.868683 |
Target: 5'- gCGG-GGAGUUUGGguuccaGCuCCugGGGGc -3' miRNA: 3'- -GCCgCCUCGAAUUag----CGuGGugCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132413 | 0.66 | 0.875965 |
Target: 5'- -cGCGGGGCcgGGg-GUcCCGCGGGGg -3' miRNA: 3'- gcCGCCUCGaaUUagCGuGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 72543 | 0.66 | 0.88303 |
Target: 5'- aGGCGGAaucGCUgcca-GCGCgGaCGGGGc -3' miRNA: 3'- gCCGCCU---CGAauuagCGUGgU-GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 18434 | 0.66 | 0.88303 |
Target: 5'- uCGGCGGAGUgucacgUGucccuaCGCGacaACGGGGu -3' miRNA: 3'- -GCCGCCUCGa-----AUua----GCGUgg-UGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 51732 | 0.66 | 0.88303 |
Target: 5'- gGGCGGAGUc--AUCGCAUUagGCGGa- -3' miRNA: 3'- gCCGCCUCGaauUAGCGUGG--UGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 71929 | 0.66 | 0.896493 |
Target: 5'- uCGcGCGGAGUcgauuUUAcuaccgggagugGUUGCGCCAauucCGGGGu -3' miRNA: 3'- -GC-CGCCUCG-----AAU------------UAGCGUGGU----GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 93544 | 0.66 | 0.902884 |
Target: 5'- uCGGUGGGaCUcaaUAGUCGCACCucauCGGa- -3' miRNA: 3'- -GCCGCCUcGA---AUUAGCGUGGu---GCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 122349 | 0.66 | 0.902884 |
Target: 5'- gGGUGGcAGUgugUAAgucacgCGCGCCGCGGc- -3' miRNA: 3'- gCCGCC-UCGa--AUUa-----GCGUGGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 118110 | 0.66 | 0.902884 |
Target: 5'- aCGGUGGGGgccgcgCGcCACCAUGGGc -3' miRNA: 3'- -GCCGCCUCgaauuaGC-GUGGUGCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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