Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 18475 | 1.09 | 0.002481 |
Target: 5'- uCGGCGGAGCUUAAUCGCACCACGGGGc -3' miRNA: 3'- -GCCGCCUCGAAUUAGCGUGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132602 | 0.79 | 0.265399 |
Target: 5'- cCGGCGGAGCg-----GCACC-CGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCGUGGuGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 85712 | 0.73 | 0.526988 |
Target: 5'- aGGCGGAGCg----CGCACaCGCGcGGa -3' miRNA: 3'- gCCGCCUCGaauuaGCGUG-GUGC-CCc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 89815 | 0.72 | 0.566729 |
Target: 5'- cCGGCGGAGCUgacggUGCGgCGCGGu- -3' miRNA: 3'- -GCCGCCUCGAauua-GCGUgGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 42292 | 0.71 | 0.617372 |
Target: 5'- gGGUGGAGCgUGGcCGcCACCA-GGGGa -3' miRNA: 3'- gCCGCCUCGaAUUaGC-GUGGUgCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 10886 | 0.71 | 0.637757 |
Target: 5'- aGGCGGcGCUUcGUCGCGCUucccUGGGa -3' miRNA: 3'- gCCGCCuCGAAuUAGCGUGGu---GCCCc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 11763 | 0.71 | 0.658124 |
Target: 5'- cCGGCGuuGGCUucgcgguggUGGUCGCGCCcuUGGGGg -3' miRNA: 3'- -GCCGCc-UCGA---------AUUAGCGUGGu-GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 55206 | 0.7 | 0.678408 |
Target: 5'- uGGUuuuGGGUUUGuacaGCGCCGCGGGGg -3' miRNA: 3'- gCCGc--CUCGAAUuag-CGUGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 27596 | 0.7 | 0.688498 |
Target: 5'- gGGCGG-GCa----CGCGCCagcGCGGGGg -3' miRNA: 3'- gCCGCCuCGaauuaGCGUGG---UGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 83390 | 0.7 | 0.698541 |
Target: 5'- gCGGCGGAaguuugugGUUUAugaGCACCACcGGGa -3' miRNA: 3'- -GCCGCCU--------CGAAUuagCGUGGUGcCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 9093 | 0.69 | 0.718453 |
Target: 5'- uCGGUaaucuuGGAGCUUAuaCGaCACCugGGGa -3' miRNA: 3'- -GCCG------CCUCGAAUuaGC-GUGGugCCCc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132452 | 0.69 | 0.738072 |
Target: 5'- cCGGCGGcGCccgGcgCGCggGCC-CGGGGg -3' miRNA: 3'- -GCCGCCuCGaa-UuaGCG--UGGuGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 15030 | 0.69 | 0.766791 |
Target: 5'- aGGCGGGGCgugGcgCGCGCgCACGa-- -3' miRNA: 3'- gCCGCCUCGaa-UuaGCGUG-GUGCccc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132485 | 0.68 | 0.776138 |
Target: 5'- cCGGCGGGGCgga---GgGCCGggagcCGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCgUGGU-----GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 16999 | 0.68 | 0.795341 |
Target: 5'- aGGUGGGGCagguugguggucuugUAAUCGCAg-ACGGGGc -3' miRNA: 3'- gCCGCCUCGa--------------AUUAGCGUggUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 27699 | 0.68 | 0.820784 |
Target: 5'- cCGGCGuGGUggc-UCGCcgGCUGCGGGGg -3' miRNA: 3'- -GCCGCcUCGaauuAGCG--UGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 14918 | 0.68 | 0.820784 |
Target: 5'- aCGGCccuGGAGUUUGAcUGCAgCugGGaGGa -3' miRNA: 3'- -GCCG---CCUCGAAUUaGCGUgGugCC-CC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132714 | 0.68 | 0.820784 |
Target: 5'- cCGGCaucgGGAGCcg---CGCGCCGCGGc- -3' miRNA: 3'- -GCCG----CCUCGaauuaGCGUGGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 119176 | 0.67 | 0.837509 |
Target: 5'- aGGCGaGAGaCUguAUCGCgGuuGCGGGGu -3' miRNA: 3'- gCCGC-CUC-GAauUAGCG-UggUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132688 | 0.67 | 0.841577 |
Target: 5'- uCGGCGGGGCccggcgcggggCGCgACCgagggccccgggagaACGGGGa -3' miRNA: 3'- -GCCGCCUCGaauua------GCG-UGG---------------UGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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