miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13106 5' -56.3 NC_003401.1 + 85712 0.73 0.526988
Target:  5'- aGGCGGAGCg----CGCACaCGCGcGGa -3'
miRNA:   3'- gCCGCCUCGaauuaGCGUG-GUGC-CCc -5'
13106 5' -56.3 NC_003401.1 + 122349 0.66 0.902884
Target:  5'- gGGUGGcAGUgugUAAgucacgCGCGCCGCGGc- -3'
miRNA:   3'- gCCGCC-UCGa--AUUa-----GCGUGGUGCCcc -5'
13106 5' -56.3 NC_003401.1 + 93544 0.66 0.902884
Target:  5'- uCGGUGGGaCUcaaUAGUCGCACCucauCGGa- -3'
miRNA:   3'- -GCCGCCUcGA---AUUAGCGUGGu---GCCcc -5'
13106 5' -56.3 NC_003401.1 + 51732 0.66 0.88303
Target:  5'- gGGCGGAGUc--AUCGCAUUagGCGGa- -3'
miRNA:   3'- gCCGCCUCGaauUAGCGUGG--UGCCcc -5'
13106 5' -56.3 NC_003401.1 + 18434 0.66 0.88303
Target:  5'- uCGGCGGAGUgucacgUGucccuaCGCGacaACGGGGu -3'
miRNA:   3'- -GCCGCCUCGa-----AUua----GCGUgg-UGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 132413 0.66 0.875965
Target:  5'- -cGCGGGGCcgGGg-GUcCCGCGGGGg -3'
miRNA:   3'- gcCGCCUCGaaUUagCGuGGUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 132688 0.67 0.841577
Target:  5'- uCGGCGGGGCccggcgcggggCGCgACCgagggccccgggagaACGGGGa -3'
miRNA:   3'- -GCCGCCUCGaauua------GCG-UGG---------------UGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 27699 0.68 0.820784
Target:  5'- cCGGCGuGGUggc-UCGCcgGCUGCGGGGg -3'
miRNA:   3'- -GCCGCcUCGaauuAGCG--UGGUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 14918 0.68 0.820784
Target:  5'- aCGGCccuGGAGUUUGAcUGCAgCugGGaGGa -3'
miRNA:   3'- -GCCG---CCUCGAAUUaGCGUgGugCC-CC- -5'
13106 5' -56.3 NC_003401.1 + 9093 0.69 0.718453
Target:  5'- uCGGUaaucuuGGAGCUUAuaCGaCACCugGGGa -3'
miRNA:   3'- -GCCG------CCUCGAAUuaGC-GUGGugCCCc -5'
13106 5' -56.3 NC_003401.1 + 83390 0.7 0.698541
Target:  5'- gCGGCGGAaguuugugGUUUAugaGCACCACcGGGa -3'
miRNA:   3'- -GCCGCCU--------CGAAUuagCGUGGUGcCCC- -5'
13106 5' -56.3 NC_003401.1 + 27596 0.7 0.688498
Target:  5'- gGGCGG-GCa----CGCGCCagcGCGGGGg -3'
miRNA:   3'- gCCGCCuCGaauuaGCGUGG---UGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 10886 0.71 0.637757
Target:  5'- aGGCGGcGCUUcGUCGCGCUucccUGGGa -3'
miRNA:   3'- gCCGCCuCGAAuUAGCGUGGu---GCCCc -5'
13106 5' -56.3 NC_003401.1 + 132452 0.69 0.738072
Target:  5'- cCGGCGGcGCccgGcgCGCggGCC-CGGGGg -3'
miRNA:   3'- -GCCGCCuCGaa-UuaGCG--UGGuGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 55206 0.7 0.678408
Target:  5'- uGGUuuuGGGUUUGuacaGCGCCGCGGGGg -3'
miRNA:   3'- gCCGc--CUCGAAUuag-CGUGGUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 11763 0.71 0.658124
Target:  5'- cCGGCGuuGGCUucgcgguggUGGUCGCGCCcuUGGGGg -3'
miRNA:   3'- -GCCGCc-UCGA---------AUUAGCGUGGu-GCCCC- -5'
13106 5' -56.3 NC_003401.1 + 42292 0.71 0.617372
Target:  5'- gGGUGGAGCgUGGcCGcCACCA-GGGGa -3'
miRNA:   3'- gCCGCCUCGaAUUaGC-GUGGUgCCCC- -5'
13106 5' -56.3 NC_003401.1 + 89815 0.72 0.566729
Target:  5'- cCGGCGGAGCUgacggUGCGgCGCGGu- -3'
miRNA:   3'- -GCCGCCUCGAauua-GCGUgGUGCCcc -5'
13106 5' -56.3 NC_003401.1 + 132602 0.79 0.265399
Target:  5'- cCGGCGGAGCg-----GCACC-CGGGGg -3'
miRNA:   3'- -GCCGCCUCGaauuagCGUGGuGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 118110 0.66 0.902884
Target:  5'- aCGGUGGGGgccgcgCGcCACCAUGGGc -3'
miRNA:   3'- -GCCGCCUCgaauuaGC-GUGGUGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.