Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 132485 | 0.68 | 0.776138 |
Target: 5'- cCGGCGGGGCgga---GgGCCGggagcCGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCgUGGU-----GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132452 | 0.69 | 0.738072 |
Target: 5'- cCGGCGGcGCccgGcgCGCggGCC-CGGGGg -3' miRNA: 3'- -GCCGCCuCGaa-UuaGCG--UGGuGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 55206 | 0.7 | 0.678408 |
Target: 5'- uGGUuuuGGGUUUGuacaGCGCCGCGGGGg -3' miRNA: 3'- gCCGc--CUCGAAUuag-CGUGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 11763 | 0.71 | 0.658124 |
Target: 5'- cCGGCGuuGGCUucgcgguggUGGUCGCGCCcuUGGGGg -3' miRNA: 3'- -GCCGCc-UCGA---------AUUAGCGUGGu-GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 42292 | 0.71 | 0.617372 |
Target: 5'- gGGUGGAGCgUGGcCGcCACCA-GGGGa -3' miRNA: 3'- gCCGCCUCGaAUUaGC-GUGGUgCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 89815 | 0.72 | 0.566729 |
Target: 5'- cCGGCGGAGCUgacggUGCGgCGCGGu- -3' miRNA: 3'- -GCCGCCUCGAauua-GCGUgGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132602 | 0.79 | 0.265399 |
Target: 5'- cCGGCGGAGCg-----GCACC-CGGGGg -3' miRNA: 3'- -GCCGCCUCGaauuagCGUGGuGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 18475 | 1.09 | 0.002481 |
Target: 5'- uCGGCGGAGCUUAAUCGCACCACGGGGc -3' miRNA: 3'- -GCCGCCUCGAAUUAGCGUGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 71929 | 0.66 | 0.896493 |
Target: 5'- uCGcGCGGAGUcgauuUUAcuaccgggagugGUUGCGCCAauucCGGGGu -3' miRNA: 3'- -GC-CGCCUCG-----AAU------------UAGCGUGGU----GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 72543 | 0.66 | 0.88303 |
Target: 5'- aGGCGGAaucGCUgcca-GCGCgGaCGGGGc -3' miRNA: 3'- gCCGCCU---CGAauuagCGUGgU-GCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 117927 | 0.67 | 0.861191 |
Target: 5'- gCGGCGGGGUcgcggcgaGGUCaCGCCgaaccgggcGCGGGGg -3' miRNA: 3'- -GCCGCCUCGaa------UUAGcGUGG---------UGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 16999 | 0.68 | 0.795341 |
Target: 5'- aGGUGGGGCagguugguggucuugUAAUCGCAg-ACGGGGc -3' miRNA: 3'- gCCGCCUCGa--------------AUUAGCGUggUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 118110 | 0.66 | 0.902884 |
Target: 5'- aCGGUGGGGgccgcgCGcCACCAUGGGc -3' miRNA: 3'- -GCCGCCUCgaauuaGC-GUGGUGCCCc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132714 | 0.68 | 0.820784 |
Target: 5'- cCGGCaucgGGAGCcg---CGCGCCGCGGc- -3' miRNA: 3'- -GCCG----CCUCGaauuaGCGUGGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 125612 | 0.66 | 0.868683 |
Target: 5'- gCGG-GGAGUUUGGguuccaGCuCCugGGGGc -3' miRNA: 3'- -GCCgCCUCGAAUUag----CGuGGugCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 15030 | 0.69 | 0.766791 |
Target: 5'- aGGCGGGGCgugGcgCGCGCgCACGa-- -3' miRNA: 3'- gCCGCCUCGaa-UuaGCGUG-GUGCccc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 119176 | 0.67 | 0.837509 |
Target: 5'- aGGCGaGAGaCUguAUCGCgGuuGCGGGGu -3' miRNA: 3'- gCCGC-CUC-GAauUAGCG-UggUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 27699 | 0.68 | 0.820784 |
Target: 5'- cCGGCGuGGUggc-UCGCcgGCUGCGGGGg -3' miRNA: 3'- -GCCGCcUCGaauuAGCG--UGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 122349 | 0.66 | 0.902884 |
Target: 5'- gGGUGGcAGUgugUAAgucacgCGCGCCGCGGc- -3' miRNA: 3'- gCCGCC-UCGa--AUUa-----GCGUGGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 93544 | 0.66 | 0.902884 |
Target: 5'- uCGGUGGGaCUcaaUAGUCGCACCucauCGGa- -3' miRNA: 3'- -GCCGCCUcGA---AUUAGCGUGGu---GCCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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