Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 9093 | 0.69 | 0.718453 |
Target: 5'- uCGGUaaucuuGGAGCUUAuaCGaCACCugGGGa -3' miRNA: 3'- -GCCG------CCUCGAAUuaGC-GUGGugCCCc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 10886 | 0.71 | 0.637757 |
Target: 5'- aGGCGGcGCUUcGUCGCGCUucccUGGGa -3' miRNA: 3'- gCCGCCuCGAAuUAGCGUGGu---GCCCc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 11763 | 0.71 | 0.658124 |
Target: 5'- cCGGCGuuGGCUucgcgguggUGGUCGCGCCcuUGGGGg -3' miRNA: 3'- -GCCGCc-UCGA---------AUUAGCGUGGu-GCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 14918 | 0.68 | 0.820784 |
Target: 5'- aCGGCccuGGAGUUUGAcUGCAgCugGGaGGa -3' miRNA: 3'- -GCCG---CCUCGAAUUaGCGUgGugCC-CC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 15030 | 0.69 | 0.766791 |
Target: 5'- aGGCGGGGCgugGcgCGCGCgCACGa-- -3' miRNA: 3'- gCCGCCUCGaa-UuaGCGUG-GUGCccc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 16999 | 0.68 | 0.795341 |
Target: 5'- aGGUGGGGCagguugguggucuugUAAUCGCAg-ACGGGGc -3' miRNA: 3'- gCCGCCUCGa--------------AUUAGCGUggUGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 18434 | 0.66 | 0.88303 |
Target: 5'- uCGGCGGAGUgucacgUGucccuaCGCGacaACGGGGu -3' miRNA: 3'- -GCCGCCUCGa-----AUua----GCGUgg-UGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 18475 | 1.09 | 0.002481 |
Target: 5'- uCGGCGGAGCUUAAUCGCACCACGGGGc -3' miRNA: 3'- -GCCGCCUCGAAUUAGCGUGGUGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 27596 | 0.7 | 0.688498 |
Target: 5'- gGGCGG-GCa----CGCGCCagcGCGGGGg -3' miRNA: 3'- gCCGCCuCGaauuaGCGUGG---UGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 27699 | 0.68 | 0.820784 |
Target: 5'- cCGGCGuGGUggc-UCGCcgGCUGCGGGGg -3' miRNA: 3'- -GCCGCcUCGaauuAGCG--UGGUGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 42292 | 0.71 | 0.617372 |
Target: 5'- gGGUGGAGCgUGGcCGcCACCA-GGGGa -3' miRNA: 3'- gCCGCCUCGaAUUaGC-GUGGUgCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 51732 | 0.66 | 0.88303 |
Target: 5'- gGGCGGAGUc--AUCGCAUUagGCGGa- -3' miRNA: 3'- gCCGCCUCGaauUAGCGUGG--UGCCcc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 55206 | 0.7 | 0.678408 |
Target: 5'- uGGUuuuGGGUUUGuacaGCGCCGCGGGGg -3' miRNA: 3'- gCCGc--CUCGAAUuag-CGUGGUGCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 71929 | 0.66 | 0.896493 |
Target: 5'- uCGcGCGGAGUcgauuUUAcuaccgggagugGUUGCGCCAauucCGGGGu -3' miRNA: 3'- -GC-CGCCUCG-----AAU------------UAGCGUGGU----GCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 72543 | 0.66 | 0.88303 |
Target: 5'- aGGCGGAaucGCUgcca-GCGCgGaCGGGGc -3' miRNA: 3'- gCCGCCU---CGAauuagCGUGgU-GCCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 83390 | 0.7 | 0.698541 |
Target: 5'- gCGGCGGAaguuugugGUUUAugaGCACCACcGGGa -3' miRNA: 3'- -GCCGCCU--------CGAAUuagCGUGGUGcCCC- -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 85712 | 0.73 | 0.526988 |
Target: 5'- aGGCGGAGCg----CGCACaCGCGcGGa -3' miRNA: 3'- gCCGCCUCGaauuaGCGUG-GUGC-CCc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 89815 | 0.72 | 0.566729 |
Target: 5'- cCGGCGGAGCUgacggUGCGgCGCGGu- -3' miRNA: 3'- -GCCGCCUCGAauua-GCGUgGUGCCcc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 93544 | 0.66 | 0.902884 |
Target: 5'- uCGGUGGGaCUcaaUAGUCGCACCucauCGGa- -3' miRNA: 3'- -GCCGCCUcGA---AUUAGCGUGGu---GCCcc -5' |
|||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 117927 | 0.67 | 0.861191 |
Target: 5'- gCGGCGGGGUcgcggcgaGGUCaCGCCgaaccgggcGCGGGGg -3' miRNA: 3'- -GCCGCCUCGaa------UUAGcGUGG---------UGCCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home