Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 22292 | 0.69 | 0.429688 |
Target: 5'- aCGUAGACGCaGCUGgGCgAAuGGCUCg -3' miRNA: 3'- -GCGUCUGCGcCGGCaCGgUUcCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 105490 | 0.69 | 0.421035 |
Target: 5'- gGCcagGGugGCGGCCGUcaCCuGGGcGCUCa -3' miRNA: 3'- gCG---UCugCGCCGGCAc-GGuUCC-CGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 18973 | 0.7 | 0.387506 |
Target: 5'- uGaCAGACGCGuGCa--GCCAggAGGGCUCc -3' miRNA: 3'- gC-GUCUGCGC-CGgcaCGGU--UCCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 120406 | 0.7 | 0.379402 |
Target: 5'- aCGUGGAUGCGGuCUGuUGCC-AGGGCcCa -3' miRNA: 3'- -GCGUCUGCGCC-GGC-ACGGuUCCCGaG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 18450 | 0.7 | 0.363539 |
Target: 5'- gGCAgGGCGCGGCgGcgGCCAcaAGGGUg- -3' miRNA: 3'- gCGU-CUGCGCCGgCa-CGGU--UCCCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 11751 | 0.7 | 0.363539 |
Target: 5'- uCGCGGugGUGGUCGcGCCcuuGGGGGUg- -3' miRNA: 3'- -GCGUCugCGCCGGCaCGG---UUCCCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 20272 | 0.71 | 0.348141 |
Target: 5'- cCGgGGACGCGgacGCCGcgGCCAuuGGCUCc -3' miRNA: 3'- -GCgUCUGCGC---CGGCa-CGGUucCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 119705 | 0.71 | 0.340619 |
Target: 5'- gGCAGACGacagagaGGCCGUGCUGu-GGCUUu -3' miRNA: 3'- gCGUCUGCg------CCGGCACGGUucCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 18824 | 0.71 | 0.318763 |
Target: 5'- gCGCGGAuCGCGaGCUgGUGCUgcGGGUUCa -3' miRNA: 3'- -GCGUCU-GCGC-CGG-CACGGuuCCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 121947 | 0.72 | 0.304788 |
Target: 5'- gGCuGGCGCGGCCGUGCCAc--GCc- -3' miRNA: 3'- gCGuCUGCGCCGGCACGGUuccCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132538 | 0.73 | 0.253603 |
Target: 5'- aGCGGcccggcGCGCGGCgCGgggcgGCCGGGGGCg- -3' miRNA: 3'- gCGUC------UGCGCCG-GCa----CGGUUCCCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 17497 | 0.77 | 0.131007 |
Target: 5'- aCGCGGACGCGGCgCGcgugGCCcccGGGUUCg -3' miRNA: 3'- -GCGUCUGCGCCG-GCa---CGGuu-CCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 22344 | 1.1 | 0.000612 |
Target: 5'- aCGCAGACGCGGCCGUGCCAAGGGCUCa -3' miRNA: 3'- -GCGUCUGCGCCGGCACGGUUCCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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