miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13111 5' -46.3 NC_003401.1 + 88049 0.66 0.999898
Target:  5'- cACCuAGGAGGCguucCCACUCCggaaggcgaGCCGUg -3'
miRNA:   3'- -UGG-UUUUUUGauu-GGUGAGGa--------UGGCA- -5'
13111 5' -46.3 NC_003401.1 + 63966 0.66 0.999898
Target:  5'- gGCgGAGAAGCUGACgGCUUUUcGCCa- -3'
miRNA:   3'- -UGgUUUUUUGAUUGgUGAGGA-UGGca -5'
13111 5' -46.3 NC_003401.1 + 28338 0.66 0.999866
Target:  5'- cGCCGccuGAGCUGACCG-UCCcAUCGUa -3'
miRNA:   3'- -UGGUuu-UUUGAUUGGUgAGGaUGGCA- -5'
13111 5' -46.3 NC_003401.1 + 45150 0.66 0.999866
Target:  5'- uGCCGAuuuAAAAUccGACCACUCCguCCGg -3'
miRNA:   3'- -UGGUU---UUUUGa-UUGGUGAGGauGGCa -5'
13111 5' -46.3 NC_003401.1 + 72720 0.66 0.999866
Target:  5'- cACCGAAAAGgaGGCCAaaaUCgcagCUGCCGUu -3'
miRNA:   3'- -UGGUUUUUUgaUUGGUg--AG----GAUGGCA- -5'
13111 5' -46.3 NC_003401.1 + 107610 0.66 0.999825
Target:  5'- uGCCAGAAGACgccaCGCUCCcggguccGCCGc -3'
miRNA:   3'- -UGGUUUUUUGauugGUGAGGa------UGGCa -5'
13111 5' -46.3 NC_003401.1 + 95414 0.66 0.999825
Target:  5'- aGCUAGAAAGCUGACCuccGCgaagCCcgGCUGa -3'
miRNA:   3'- -UGGUUUUUUGAUUGG---UGa---GGa-UGGCa -5'
13111 5' -46.3 NC_003401.1 + 14167 0.66 0.999774
Target:  5'- cACCGAu--GCUc-CCGCcCCUGCCGg -3'
miRNA:   3'- -UGGUUuuuUGAuuGGUGaGGAUGGCa -5'
13111 5' -46.3 NC_003401.1 + 61069 0.66 0.999774
Target:  5'- uCCGgcuGAAGACUccgGGCCGUUCUUGCCGUu -3'
miRNA:   3'- uGGU---UUUUUGA---UUGGUGAGGAUGGCA- -5'
13111 5' -46.3 NC_003401.1 + 11500 0.67 0.99971
Target:  5'- gGCCAugauGAuAACUAACCGaacgcgucguCUCCUGCgGg -3'
miRNA:   3'- -UGGU----UUuUUGAUUGGU----------GAGGAUGgCa -5'
13111 5' -46.3 NC_003401.1 + 14966 0.67 0.99971
Target:  5'- gACCGAGcGACUGGCC-C-CCgUACCGc -3'
miRNA:   3'- -UGGUUUuUUGAUUGGuGaGG-AUGGCa -5'
13111 5' -46.3 NC_003401.1 + 64164 0.67 0.99971
Target:  5'- aACCA--GAGC-GGCCgGCUaCCUACCGUc -3'
miRNA:   3'- -UGGUuuUUUGaUUGG-UGA-GGAUGGCA- -5'
13111 5' -46.3 NC_003401.1 + 11210 0.67 0.99971
Target:  5'- gGCCGGGAAAgaGAUCGCUCUgGCgCGUc -3'
miRNA:   3'- -UGGUUUUUUgaUUGGUGAGGaUG-GCA- -5'
13111 5' -46.3 NC_003401.1 + 19771 0.67 0.99963
Target:  5'- gGCCGAGGAGCU-GCCGCagUUucGCCGg -3'
miRNA:   3'- -UGGUUUUUUGAuUGGUGagGA--UGGCa -5'
13111 5' -46.3 NC_003401.1 + 111351 0.67 0.999532
Target:  5'- aGCCAAGAAGCUGGgauucugcCCACg-UUGCCGa -3'
miRNA:   3'- -UGGUUUUUUGAUU--------GGUGagGAUGGCa -5'
13111 5' -46.3 NC_003401.1 + 22851 0.67 0.999412
Target:  5'- gUCAGGugGCUAACCACgCCUGguuuCCGUc -3'
miRNA:   3'- uGGUUUuuUGAUUGGUGaGGAU----GGCA- -5'
13111 5' -46.3 NC_003401.1 + 68031 0.67 0.999412
Target:  5'- -aCGAAGAACUcguaCGCgUCCUGCCGg -3'
miRNA:   3'- ugGUUUUUUGAuug-GUG-AGGAUGGCa -5'
13111 5' -46.3 NC_003401.1 + 121180 0.68 0.999091
Target:  5'- cGCCGGuu-GCUGcuGCCGCUCCUcCCc- -3'
miRNA:   3'- -UGGUUuuuUGAU--UGGUGAGGAuGGca -5'
13111 5' -46.3 NC_003401.1 + 119583 0.68 0.99888
Target:  5'- gACCGAAGuccACUAACCGCUUaUGCgGg -3'
miRNA:   3'- -UGGUUUUu--UGAUUGGUGAGgAUGgCa -5'
13111 5' -46.3 NC_003401.1 + 18721 0.69 0.997095
Target:  5'- cACCAGGGAGCUGuACCGuggCgUGCCGUu -3'
miRNA:   3'- -UGGUUUUUUGAU-UGGUga-GgAUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.