miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13116 5' -58.5 NC_003401.1 + 28320 1.12 0.001256
Target:  5'- uCCCAUCGUACGCACCGCCCGUCGCGCc -3'
miRNA:   3'- -GGGUAGCAUGCGUGGCGGGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 82533 0.78 0.217673
Target:  5'- uCCUGUCGUGCGCcaaCGCgUGUCGUGCa -3'
miRNA:   3'- -GGGUAGCAUGCGug-GCGgGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 125173 0.74 0.374896
Target:  5'- cCCCuggcagugggCGUACGUGCCGCCCGagcUUGCGg -3'
miRNA:   3'- -GGGua--------GCAUGCGUGGCGGGC---AGCGCg -5'
13116 5' -58.5 NC_003401.1 + 123204 0.74 0.395932
Target:  5'- aCCGUCGgucaacuggaccgGCGUGCCGCCCGagcUGUGCa -3'
miRNA:   3'- gGGUAGCa------------UGCGUGGCGGGCa--GCGCG- -5'
13116 5' -58.5 NC_003401.1 + 118618 0.73 0.441969
Target:  5'- gCCgGUCGgugaacgggagGCGCGCCGCuuG-CGUGCg -3'
miRNA:   3'- -GGgUAGCa----------UGCGUGGCGggCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 43352 0.73 0.450823
Target:  5'- uUCCGUUGaccaccACGUACUGCagguCCGUCGCGCu -3'
miRNA:   3'- -GGGUAGCa-----UGCGUGGCG----GGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 109034 0.72 0.468818
Target:  5'- aCCCAcgCGUACGCcucuaacaacgACCGgCCGauaUCGUGCa -3'
miRNA:   3'- -GGGUa-GCAUGCG-----------UGGCgGGC---AGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 118717 0.72 0.477952
Target:  5'- cCCCAgaacCGgcCGCGCCGCuuGgcgGCGCg -3'
miRNA:   3'- -GGGUa---GCauGCGUGGCGggCag-CGCG- -5'
13116 5' -58.5 NC_003401.1 + 17725 0.72 0.496477
Target:  5'- aCCGgaUCGU--GUGCCGCCCGcUCGCGUu -3'
miRNA:   3'- gGGU--AGCAugCGUGGCGGGC-AGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 18338 0.71 0.52485
Target:  5'- gCCGaCG-ACGCGCCGCgagaccUCGUCGCGUc -3'
miRNA:   3'- gGGUaGCaUGCGUGGCG------GGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 119994 0.71 0.52485
Target:  5'- cCCCGUCccuggugGCG-GCCGCCUG-CGCGCu -3'
miRNA:   3'- -GGGUAGca-----UGCgUGGCGGGCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 85868 0.71 0.52485
Target:  5'- gUCCGcgcgUGUGCGCGcuCCGCCUugaGUUGCGCa -3'
miRNA:   3'- -GGGUa---GCAUGCGU--GGCGGG---CAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132734 0.71 0.549924
Target:  5'- gCCAUgcCGgGCGCgGCCGCCCGgcaucgggagccgCGCGCc -3'
miRNA:   3'- gGGUA--GCaUGCG-UGGCGGGCa------------GCGCG- -5'
13116 5' -58.5 NC_003401.1 + 15231 0.71 0.549924
Target:  5'- uCCCugGUCGUguagaagACGCaggagaucuggaucACCGCgucgCCGUCGCGCg -3'
miRNA:   3'- -GGG--UAGCA-------UGCG--------------UGGCG----GGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 45028 0.7 0.577324
Target:  5'- gCCCAUagUGUGCGCGCUGaccagaaucgcuagaCCCGUUGUGg -3'
miRNA:   3'- -GGGUA--GCAUGCGUGGC---------------GGGCAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 119095 0.7 0.583238
Target:  5'- aCCGggugCGUugGCgGCCacgaccuugGCCaCGUCGCGCc -3'
miRNA:   3'- gGGUa---GCAugCG-UGG---------CGG-GCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 19912 0.7 0.583238
Target:  5'- gCUAUU--GCGCGgCGCCCGUCcCGCa -3'
miRNA:   3'- gGGUAGcaUGCGUgGCGGGCAGcGCG- -5'
13116 5' -58.5 NC_003401.1 + 14740 0.7 0.587187
Target:  5'- gCUAUCGUccgguuccAUGCucucgacccucagcgACCGCCuCGUCGCGUg -3'
miRNA:   3'- gGGUAGCA--------UGCG---------------UGGCGG-GCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 13995 0.7 0.622901
Target:  5'- aCCCAcacgccUGUACuuGCCGCCCGccagagcCGCGCg -3'
miRNA:   3'- -GGGUa-----GCAUGcgUGGCGGGCa------GCGCG- -5'
13116 5' -58.5 NC_003401.1 + 18913 0.7 0.622901
Target:  5'- aCgGUgGUGCGC-CCGCCCGggGUGUu -3'
miRNA:   3'- gGgUAgCAUGCGuGGCGGGCagCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.