miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13116 5' -58.5 NC_003401.1 + 8422 0.68 0.703032
Target:  5'- uCCCGUCGguuugacgaaccccgACuGCACCGCCuCGgauccCGCGg -3'
miRNA:   3'- -GGGUAGCa--------------UG-CGUGGCGG-GCa----GCGCg -5'
13116 5' -58.5 NC_003401.1 + 11765 0.67 0.7593
Target:  5'- gCCCggCGUugGCuuCGCgguggUgGUCGCGCc -3'
miRNA:   3'- -GGGuaGCAugCGugGCG-----GgCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 13995 0.7 0.622901
Target:  5'- aCCCAcacgccUGUACuuGCCGCCCGccagagcCGCGCg -3'
miRNA:   3'- -GGGUa-----GCAUGcgUGGCGGGCa------GCGCG- -5'
13116 5' -58.5 NC_003401.1 + 14740 0.7 0.587187
Target:  5'- gCUAUCGUccgguuccAUGCucucgacccucagcgACCGCCuCGUCGCGUg -3'
miRNA:   3'- gGGUAGCA--------UGCG---------------UGGCGG-GCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 14855 0.67 0.792809
Target:  5'- aCCAcguucgggugguacUCGUGCGCGCgCGCCaCGcCcCGCc -3'
miRNA:   3'- gGGU--------------AGCAUGCGUG-GCGG-GCaGcGCG- -5'
13116 5' -58.5 NC_003401.1 + 15231 0.71 0.549924
Target:  5'- uCCCugGUCGUguagaagACGCaggagaucuggaucACCGCgucgCCGUCGCGCg -3'
miRNA:   3'- -GGG--UAGCA-------UGCG--------------UGGCG----GGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 16232 0.66 0.804159
Target:  5'- gCCAggGUGCGCcggAUCGCCCuUCGCu- -3'
miRNA:   3'- gGGUagCAUGCG---UGGCGGGcAGCGcg -5'
13116 5' -58.5 NC_003401.1 + 16314 0.69 0.652741
Target:  5'- cUCgGUCGcgAgGUgACCGCCCGUCacgGCGCg -3'
miRNA:   3'- -GGgUAGCa-UgCG-UGGCGGGCAG---CGCG- -5'
13116 5' -58.5 NC_003401.1 + 16980 0.66 0.81272
Target:  5'- aCCCGgauuaCGUcagACaGCACCagauuCCCGUCGCGg -3'
miRNA:   3'- -GGGUa----GCA---UG-CGUGGc----GGGCAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 17659 0.67 0.777621
Target:  5'- aCCCGggGgccacGCGCGCCGCguccgCGUCGcCGCc -3'
miRNA:   3'- -GGGUagCa----UGCGUGGCGg----GCAGC-GCG- -5'
13116 5' -58.5 NC_003401.1 + 17725 0.72 0.496477
Target:  5'- aCCGgaUCGU--GUGCCGCCCGcUCGCGUu -3'
miRNA:   3'- gGGU--AGCAugCGUGGCGGGC-AGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 17921 0.67 0.786601
Target:  5'- gUCCGUUcacACGCugUcCCCGUCGCGg -3'
miRNA:   3'- -GGGUAGca-UGCGugGcGGGCAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 18338 0.71 0.52485
Target:  5'- gCCGaCG-ACGCGCCGCgagaccUCGUCGCGUc -3'
miRNA:   3'- gGGUaGCaUGCGUGGCG------GGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 18913 0.7 0.622901
Target:  5'- aCgGUgGUGCGC-CCGCCCGggGUGUu -3'
miRNA:   3'- gGgUAgCAUGCGuGGCGGGCagCGCG- -5'
13116 5' -58.5 NC_003401.1 + 19131 0.67 0.786601
Target:  5'- gCCCuccUGgcUGCACgCGUCUGUCaGCGCg -3'
miRNA:   3'- -GGGua-GCauGCGUG-GCGGGCAG-CGCG- -5'
13116 5' -58.5 NC_003401.1 + 19912 0.7 0.583238
Target:  5'- gCUAUU--GCGCGgCGCCCGUCcCGCa -3'
miRNA:   3'- gGGUAGcaUGCGUgGCGGGCAGcGCG- -5'
13116 5' -58.5 NC_003401.1 + 21792 0.68 0.692272
Target:  5'- aCCCgAagGUGcCGCgGCCGUCCGcUGCGCg -3'
miRNA:   3'- -GGG-UagCAU-GCG-UGGCGGGCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 23881 0.69 0.68244
Target:  5'- cUCCGUCGUgauugACGU-CCGCCgCGUCcaaccgGCGCu -3'
miRNA:   3'- -GGGUAGCA-----UGCGuGGCGG-GCAG------CGCG- -5'
13116 5' -58.5 NC_003401.1 + 28320 1.12 0.001256
Target:  5'- uCCCAUCGUACGCACCGCCCGUCGCGCc -3'
miRNA:   3'- -GGGUAGCAUGCGUGGCGGGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 32981 0.66 0.804159
Target:  5'- aCCGuuUCGUGCGacaGCCGCCgGcaUCGguCGCa -3'
miRNA:   3'- gGGU--AGCAUGCg--UGGCGGgC--AGC--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.