miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13116 5' -58.5 NC_003401.1 + 14855 0.67 0.792809
Target:  5'- aCCAcguucgggugguacUCGUGCGCGCgCGCCaCGcCcCGCc -3'
miRNA:   3'- gGGU--------------AGCAUGCGUG-GCGG-GCaGcGCG- -5'
13116 5' -58.5 NC_003401.1 + 52632 0.68 0.702056
Target:  5'- uCCUAgagcCGUGCGUACCa--UGUCGCGCc -3'
miRNA:   3'- -GGGUa---GCAUGCGUGGcggGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 121371 0.68 0.707901
Target:  5'- gCCCGgugggguggucugUGUgGCuCACCGCCUGUUGCGUg -3'
miRNA:   3'- -GGGUa------------GCA-UGcGUGGCGGGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132254 0.67 0.749976
Target:  5'- gCCAUCuUGCGC-CCGgggcgaggguccCCCG-CGCGCc -3'
miRNA:   3'- gGGUAGcAUGCGuGGC------------GGGCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132358 0.67 0.749976
Target:  5'- gCCCG-CGgcCGCcgcccccgGCCGCCCcgcGcCGCGCg -3'
miRNA:   3'- -GGGUaGCauGCG--------UGGCGGG---CaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 72105 0.67 0.7593
Target:  5'- gCCGUcCGUucgACGCAgUGCCCGUauggaCGCuGCa -3'
miRNA:   3'- gGGUA-GCA---UGCGUgGCGGGCA-----GCG-CG- -5'
13116 5' -58.5 NC_003401.1 + 118848 0.67 0.777621
Target:  5'- uCCCc-CGUGCGCaucGCCGCCCuccUCGCc- -3'
miRNA:   3'- -GGGuaGCAUGCG---UGGCGGGc--AGCGcg -5'
13116 5' -58.5 NC_003401.1 + 53025 0.67 0.786601
Target:  5'- gCUGUCGUGCGCcggggGCCCGcagGCGCa -3'
miRNA:   3'- gGGUAGCAUGCGugg--CGGGCag-CGCG- -5'
13116 5' -58.5 NC_003401.1 + 17921 0.67 0.786601
Target:  5'- gUCCGUUcacACGCugUcCCCGUCGCGg -3'
miRNA:   3'- -GGGUAGca-UGCGugGcGGGCAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 42575 0.69 0.672569
Target:  5'- aCCAUC--ACGC-CCGCCCacGUUGCGg -3'
miRNA:   3'- gGGUAGcaUGCGuGGCGGG--CAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 16314 0.69 0.652741
Target:  5'- cUCgGUCGcgAgGUgACCGCCCGUCacgGCGCg -3'
miRNA:   3'- -GGgUAGCa-UgCG-UGGCGGGCAG---CGCG- -5'
13116 5' -58.5 NC_003401.1 + 13995 0.7 0.622901
Target:  5'- aCCCAcacgccUGUACuuGCCGCCCGccagagcCGCGCg -3'
miRNA:   3'- -GGGUa-----GCAUGcgUGGCGGGCa------GCGCG- -5'
13116 5' -58.5 NC_003401.1 + 118618 0.73 0.441969
Target:  5'- gCCgGUCGgugaacgggagGCGCGCCGCuuG-CGUGCg -3'
miRNA:   3'- -GGgUAGCa----------UGCGUGGCGggCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 109034 0.72 0.468818
Target:  5'- aCCCAcgCGUACGCcucuaacaacgACCGgCCGauaUCGUGCa -3'
miRNA:   3'- -GGGUa-GCAUGCG-----------UGGCgGGC---AGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 118717 0.72 0.477952
Target:  5'- cCCCAgaacCGgcCGCGCCGCuuGgcgGCGCg -3'
miRNA:   3'- -GGGUa---GCauGCGUGGCGggCag-CGCG- -5'
13116 5' -58.5 NC_003401.1 + 18338 0.71 0.52485
Target:  5'- gCCGaCG-ACGCGCCGCgagaccUCGUCGCGUc -3'
miRNA:   3'- gGGUaGCaUGCGUGGCG------GGCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 19912 0.7 0.583238
Target:  5'- gCUAUU--GCGCGgCGCCCGUCcCGCa -3'
miRNA:   3'- gGGUAGcaUGCGUgGCGGGCAGcGCG- -5'
13116 5' -58.5 NC_003401.1 + 119095 0.7 0.583238
Target:  5'- aCCGggugCGUugGCgGCCacgaccuugGCCaCGUCGCGCc -3'
miRNA:   3'- gGGUa---GCAugCG-UGG---------CGG-GCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 14740 0.7 0.587187
Target:  5'- gCUAUCGUccgguuccAUGCucucgacccucagcgACCGCCuCGUCGCGUg -3'
miRNA:   3'- gGGUAGCA--------UGCG---------------UGGCGG-GCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 18913 0.7 0.622901
Target:  5'- aCgGUgGUGCGC-CCGCCCGggGUGUu -3'
miRNA:   3'- gGgUAgCAUGCGuGGCGGGCagCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.