miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13121 5' -49.3 NC_003401.1 + 42741 0.66 0.995404
Target:  5'- --aGCCCGucgcuuACGUUGCgggGGugCCGCAc -3'
miRNA:   3'- uuaCGGGUu-----UGUAGUGa--UUugGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 128955 0.66 0.995329
Target:  5'- --gGCCCAAcGCAcgaacccUCGCUGGGCCgcUGCAg -3'
miRNA:   3'- uuaCGGGUU-UGU-------AGUGAUUUGG--GCGU- -5'
13121 5' -49.3 NC_003401.1 + 117617 0.66 0.994611
Target:  5'- --gGCCCAAACAggcaGCc-AAUCCGCGa -3'
miRNA:   3'- uuaCGGGUUUGUag--UGauUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 109214 0.66 0.99371
Target:  5'- --aGCCCGuACGUCACaAAACacaCGUAg -3'
miRNA:   3'- uuaCGGGUuUGUAGUGaUUUGg--GCGU- -5'
13121 5' -49.3 NC_003401.1 + 98159 0.66 0.992693
Target:  5'- aAAUGCUCAAuuGCGUUGCgcgAAcACCCGUAu -3'
miRNA:   3'- -UUACGGGUU--UGUAGUGa--UU-UGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 100601 0.66 0.992693
Target:  5'- cGUGCaCCAucgaaGACAUC-CcAAGCCCGCc -3'
miRNA:   3'- uUACG-GGU-----UUGUAGuGaUUUGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 84008 0.67 0.990267
Target:  5'- uGUGCUCGGGCGUaCGCUGAuCUCGUc -3'
miRNA:   3'- uUACGGGUUUGUA-GUGAUUuGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 104281 0.67 0.988838
Target:  5'- aGGUGCUgAAGCAggCGCUagacGAACUCGCGc -3'
miRNA:   3'- -UUACGGgUUUGUa-GUGA----UUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 82771 0.67 0.988686
Target:  5'- -uUGUCCGAACGUCGCccucaagggcacaUAuGCgCCGCAc -3'
miRNA:   3'- uuACGGGUUUGUAGUG-------------AUuUG-GGCGU- -5'
13121 5' -49.3 NC_003401.1 + 16382 0.67 0.98725
Target:  5'- --cGCCCccgGAGCGUCACgguuUCCGCu -3'
miRNA:   3'- uuaCGGG---UUUGUAGUGauuuGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 110368 0.67 0.98725
Target:  5'- cGUGCUCAGACGcggucagcUCACUguGAGCaCUGCAu -3'
miRNA:   3'- uUACGGGUUUGU--------AGUGA--UUUG-GGCGU- -5'
13121 5' -49.3 NC_003401.1 + 122524 0.67 0.985494
Target:  5'- uGGUGgUC-AACGUCACUuguuAACCCGUAa -3'
miRNA:   3'- -UUACgGGuUUGUAGUGAu---UUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 106709 0.67 0.985494
Target:  5'- gAGUGCucaCCGAACc-CGCcAAACCCGCAa -3'
miRNA:   3'- -UUACG---GGUUUGuaGUGaUUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 28966 0.67 0.98356
Target:  5'- --gGCCCAGAUccaGCUAAACCC-CAu -3'
miRNA:   3'- uuaCGGGUUUGuagUGAUUUGGGcGU- -5'
13121 5' -49.3 NC_003401.1 + 43126 0.68 0.975778
Target:  5'- --gGCCUGAACA-CACUAGucacggaauacgcgGCCCGCc -3'
miRNA:   3'- uuaCGGGUUUGUaGUGAUU--------------UGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 90871 0.68 0.97383
Target:  5'- -uUGCau-GGCGUCGCUGcaGGCCCGCc -3'
miRNA:   3'- uuACGgguUUGUAGUGAU--UUGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 122656 0.69 0.967971
Target:  5'- --cGCCCAAucACAucgcaucugugugaaUCACUGAcaccaagcccagccGCCCGCGa -3'
miRNA:   3'- uuaCGGGUU--UGU---------------AGUGAUU--------------UGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 105942 0.69 0.965595
Target:  5'- cGUGCCCAuugaaacgcuacccGCAUCcCUccACCCGCAc -3'
miRNA:   3'- uUACGGGUu-------------UGUAGuGAuuUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 85676 0.69 0.964183
Target:  5'- --cGCCCGAGCAUgGC-AAA-CCGCAu -3'
miRNA:   3'- uuaCGGGUUUGUAgUGaUUUgGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 108300 0.69 0.964183
Target:  5'- cGUGCCCuguuuGGCGUCGCcGGACUgCGCGa -3'
miRNA:   3'- uUACGGGu----UUGUAGUGaUUUGG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.