miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 3' -63.2 NC_003401.1 + 49889 0.99 0.003318
Target:  5'- --aGACAUCCGCCGCGCGCCUGGCCCc -3'
miRNA:   3'- gucCUGUAGGCGGCGCGCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 106006 0.88 0.0187
Target:  5'- gAGGAgcccCAUgCCGCCGCGCGCCUGGCCa -3'
miRNA:   3'- gUCCU----GUA-GGCGGCGCGCGGACCGGg -5'
13127 3' -63.2 NC_003401.1 + 132266 0.8 0.069285
Target:  5'- cCGGGGCgaggGUCCcCCGCGCGCCccccgGGCCCg -3'
miRNA:   3'- -GUCCUG----UAGGcGGCGCGCGGa----CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 15849 0.76 0.130674
Target:  5'- -uGGcCGUCCGUCaggaCGCGCCUGGCCUg -3'
miRNA:   3'- guCCuGUAGGCGGc---GCGCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 118114 0.76 0.133964
Target:  5'- gGGGACGguggggGCCGCGCGCCaccaugGGCCCc -3'
miRNA:   3'- gUCCUGUagg---CGGCGCGCGGa-----CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 127326 0.76 0.140775
Target:  5'- aAGGGCAUCCGCagauGCGUGC--GGCCCu -3'
miRNA:   3'- gUCCUGUAGGCGg---CGCGCGgaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132858 0.76 0.144298
Target:  5'- cCGGGGCccucgGUCgCGCCcCGCGCCgGGCCCc -3'
miRNA:   3'- -GUCCUG-----UAG-GCGGcGCGCGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132509 0.75 0.167173
Target:  5'- gGGGGCggCgGCCGCGgGCCcgGGCCg -3'
miRNA:   3'- gUCCUGuaGgCGGCGCgCGGa-CCGGg -5'
13127 3' -63.2 NC_003401.1 + 132377 0.74 0.175494
Target:  5'- cCGGcGGCGgcgCCgGCCGgGCGCCUccgGGCCCg -3'
miRNA:   3'- -GUC-CUGUa--GG-CGGCgCGCGGA---CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132713 0.74 0.188667
Target:  5'- --cGGCAUCgggaGCCGCGCGCCgcggcuuguggGGCCCc -3'
miRNA:   3'- gucCUGUAGg---CGGCGCGCGGa----------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 17491 0.73 0.207577
Target:  5'- gCGGcGACGcggaCGCgGCGCGCgUGGCCCc -3'
miRNA:   3'- -GUC-CUGUag--GCGgCGCGCGgACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132439 0.73 0.233496
Target:  5'- cCGGGGCcgCCcCCGgGUGCCgcuccgccgGGCCCg -3'
miRNA:   3'- -GUCCUGuaGGcGGCgCGCGGa--------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 23869 0.73 0.233496
Target:  5'- --uGACGUCCGCCGCGUccaaccggcgcuGCC-GGUCCg -3'
miRNA:   3'- gucCUGUAGGCGGCGCG------------CGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132668 0.73 0.233496
Target:  5'- gGGGGCGUCggggCGCgGCGcCGCCgGGCUCg -3'
miRNA:   3'- gUCCUGUAG----GCGgCGC-GCGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 47849 0.72 0.268131
Target:  5'- gGGGACgGUCCGUC-CGgGCCgUGGUCCg -3'
miRNA:   3'- gUCCUG-UAGGCGGcGCgCGG-ACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132376 0.71 0.274291
Target:  5'- --cGGCcgCCccgcGCCGCGCGCCgGGCCg -3'
miRNA:   3'- gucCUGuaGG----CGGCGCGCGGaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 122557 0.71 0.274291
Target:  5'- -uGGAaauucuuGUCCGCCGCGCcggugaGCCgcGGCCCu -3'
miRNA:   3'- guCCUg------UAGGCGGCGCG------CGGa-CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 18297 0.71 0.300067
Target:  5'- --uGGCcgCCGCCGCGC-CCUGcCCCg -3'
miRNA:   3'- gucCUGuaGGCGGCGCGcGGACcGGG- -5'
13127 3' -63.2 NC_003401.1 + 132641 0.71 0.309521
Target:  5'- aAGGugGUCU-CCGCGcCGCCgggaggggggccggGGCCCg -3'
miRNA:   3'- gUCCugUAGGcGGCGC-GCGGa-------------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 69290 0.7 0.320601
Target:  5'- --cGACAUCUGCgGC-C-CCUGGCCCg -3'
miRNA:   3'- gucCUGUAGGCGgCGcGcGGACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.