Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13127 | 3' | -63.2 | NC_003401.1 | + | 38197 | 0.67 | 0.52002 |
Target: 5'- cUAGGACG--CGagGCGUuucGCCUGGCCCc -3' miRNA: 3'- -GUCCUGUagGCggCGCG---CGGACCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 72458 | 0.69 | 0.363995 |
Target: 5'- gAGGGCGucuuccaUCUGcCCGCGCGUCacGGCCUu -3' miRNA: 3'- gUCCUGU-------AGGC-GGCGCGCGGa-CCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 13489 | 0.69 | 0.380392 |
Target: 5'- -uGGACAaCaCGaucgaccugaaCCGCGacCGCCUGGCCCg -3' miRNA: 3'- guCCUGUaG-GC-----------GGCGC--GCGGACCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 126855 | 0.69 | 0.396461 |
Target: 5'- cCAGG-CGuUCCGUCGCGUccuGCCUGGUg- -3' miRNA: 3'- -GUCCuGU-AGGCGGCGCG---CGGACCGgg -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 91220 | 0.69 | 0.404657 |
Target: 5'- -cGGuACAUCCaccuGCCGCGagaGCCaGGCCg -3' miRNA: 3'- guCC-UGUAGG----CGGCGCg--CGGaCCGGg -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 127875 | 0.68 | 0.421367 |
Target: 5'- gAGGACAggcgugCCGgUGCGCGCCagcugcUGGCa- -3' miRNA: 3'- gUCCUGUa-----GGCgGCGCGCGG------ACCGgg -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 14862 | 0.68 | 0.46489 |
Target: 5'- uCGGGugGUacucgUGCgCGCGCGCCacGCCCc -3' miRNA: 3'- -GUCCugUAg----GCG-GCGCGCGGacCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 19570 | 0.67 | 0.489344 |
Target: 5'- uGGGGCAagccaucuucguguUCgCGCCGCG-GUUcggUGGCCCg -3' miRNA: 3'- gUCCUGU--------------AG-GCGGCGCgCGG---ACCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 123358 | 0.67 | 0.51064 |
Target: 5'- aUAGG-CGguuuggCCGCgGCGCGgccCCUGGaCCCc -3' miRNA: 3'- -GUCCuGUa-----GGCGgCGCGC---GGACC-GGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 107630 | 0.7 | 0.349587 |
Target: 5'- cCGGGuCcgCCGCCaccGgGCGCggGGCCCa -3' miRNA: 3'- -GUCCuGuaGGCGG---CgCGCGgaCCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 53017 | 0.7 | 0.327675 |
Target: 5'- -cGGugucugCUGUCGUGCGCCgggGGCCCg -3' miRNA: 3'- guCCugua--GGCGGCGCGCGGa--CCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 69290 | 0.7 | 0.320601 |
Target: 5'- --cGACAUCUGCgGC-C-CCUGGCCCg -3' miRNA: 3'- gucCUGUAGGCGgCGcGcGGACCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 127326 | 0.76 | 0.140775 |
Target: 5'- aAGGGCAUCCGCagauGCGUGC--GGCCCu -3' miRNA: 3'- gUCCUGUAGGCGg---CGCGCGgaCCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 17491 | 0.73 | 0.207577 |
Target: 5'- gCGGcGACGcggaCGCgGCGCGCgUGGCCCc -3' miRNA: 3'- -GUC-CUGUag--GCGgCGCGCGgACCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 132439 | 0.73 | 0.233496 |
Target: 5'- cCGGGGCcgCCcCCGgGUGCCgcuccgccgGGCCCg -3' miRNA: 3'- -GUCCUGuaGGcGGCgCGCGGa--------CCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 47849 | 0.72 | 0.268131 |
Target: 5'- gGGGACgGUCCGUC-CGgGCCgUGGUCCg -3' miRNA: 3'- gUCCUG-UAGGCGGcGCgCGG-ACCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 122557 | 0.71 | 0.274291 |
Target: 5'- -uGGAaauucuuGUCCGCCGCGCcggugaGCCgcGGCCCu -3' miRNA: 3'- guCCUg------UAGGCGGCGCG------CGGa-CCGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 132376 | 0.71 | 0.274291 |
Target: 5'- --cGGCcgCCccgcGCCGCGCGCCgGGCCg -3' miRNA: 3'- gucCUGuaGG----CGGCGCGCGGaCCGGg -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 18297 | 0.71 | 0.300067 |
Target: 5'- --uGGCcgCCGCCGCGC-CCUGcCCCg -3' miRNA: 3'- gucCUGuaGGCGGCGCGcGGACcGGG- -5' |
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13127 | 3' | -63.2 | NC_003401.1 | + | 132641 | 0.71 | 0.309521 |
Target: 5'- aAGGugGUCU-CCGCGcCGCCgggaggggggccggGGCCCg -3' miRNA: 3'- gUCCugUAGGcGGCGC-GCGGa-------------CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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