miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 3' -63.2 NC_003401.1 + 10336 0.67 0.51064
Target:  5'- gAGGACcggaCGCCGUGCuGCgUGGCguCCg -3'
miRNA:   3'- gUCCUGuag-GCGGCGCG-CGgACCG--GG- -5'
13127 3' -63.2 NC_003401.1 + 13489 0.69 0.380392
Target:  5'- -uGGACAaCaCGaucgaccugaaCCGCGacCGCCUGGCCCg -3'
miRNA:   3'- guCCUGUaG-GC-----------GGCGC--GCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 14862 0.68 0.46489
Target:  5'- uCGGGugGUacucgUGCgCGCGCGCCacGCCCc -3'
miRNA:   3'- -GUCCugUAg----GCG-GCGCGCGGacCGGG- -5'
13127 3' -63.2 NC_003401.1 + 15211 0.7 0.34884
Target:  5'- gCAGGAgAUCuggaucaccgcguCGCCGuCGCGCgUGGCgCa -3'
miRNA:   3'- -GUCCUgUAG-------------GCGGC-GCGCGgACCGgG- -5'
13127 3' -63.2 NC_003401.1 + 15849 0.76 0.130674
Target:  5'- -uGGcCGUCCGUCaggaCGCGCCUGGCCUg -3'
miRNA:   3'- guCCuGUAGGCGGc---GCGCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 15963 0.66 0.567825
Target:  5'- gGGGuugACA-CCGUCGCGC-CCUGauaGCCCc -3'
miRNA:   3'- gUCC---UGUaGGCGGCGCGcGGAC---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 16249 0.66 0.538975
Target:  5'- aCGGGuCAUCgcaCGCCGCcaggguGCGCCggaucGCCCu -3'
miRNA:   3'- -GUCCuGUAG---GCGGCG------CGCGGac---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 17491 0.73 0.207577
Target:  5'- gCGGcGACGcggaCGCgGCGCGCgUGGCCCc -3'
miRNA:   3'- -GUC-CUGUag--GCGgCGCGCGgACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 18007 0.67 0.501332
Target:  5'- gGGGAgAUCCG-CGCGUcCCUGuGCgCCg -3'
miRNA:   3'- gUCCUgUAGGCgGCGCGcGGAC-CG-GG- -5'
13127 3' -63.2 NC_003401.1 + 18297 0.71 0.300067
Target:  5'- --uGGCcgCCGCCGCGC-CCUGcCCCg -3'
miRNA:   3'- gucCUGuaGGCGGCGCGcGGACcGGG- -5'
13127 3' -63.2 NC_003401.1 + 19570 0.67 0.489344
Target:  5'- uGGGGCAagccaucuucguguUCgCGCCGCG-GUUcggUGGCCCg -3'
miRNA:   3'- gUCCUGU--------------AG-GCGGCGCgCGG---ACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 20270 0.7 0.35712
Target:  5'- gGGGACGcggaCGCCGCG-GCCauUGGCuCCg -3'
miRNA:   3'- gUCCUGUag--GCGGCGCgCGG--ACCG-GG- -5'
13127 3' -63.2 NC_003401.1 + 21778 0.68 0.46489
Target:  5'- -cGGcCGUCCGCUGCGCguGCCgcGGCgaCCa -3'
miRNA:   3'- guCCuGUAGGCGGCGCG--CGGa-CCG--GG- -5'
13127 3' -63.2 NC_003401.1 + 23869 0.73 0.233496
Target:  5'- --uGACGUCCGCCGCGUccaaccggcgcuGCC-GGUCCg -3'
miRNA:   3'- gucCUGUAGGCGGCGCG------------CGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 27533 0.66 0.537068
Target:  5'- gGGGGC--CgGCUGUGCGCUggccuccaccggGGCCCg -3'
miRNA:   3'- gUCCUGuaGgCGGCGCGCGGa-----------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 38197 0.67 0.52002
Target:  5'- cUAGGACG--CGagGCGUuucGCCUGGCCCc -3'
miRNA:   3'- -GUCCUGUagGCggCGCG---CGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 45900 0.69 0.364765
Target:  5'- uCGGaGACGUgcuugUCGCCGC-CGUCaUGGCCCa -3'
miRNA:   3'- -GUC-CUGUA-----GGCGGCGcGCGG-ACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 47849 0.72 0.268131
Target:  5'- gGGGACgGUCCGUC-CGgGCCgUGGUCCg -3'
miRNA:   3'- gUCCUG-UAGGCGGcGCgCGG-ACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 49889 0.99 0.003318
Target:  5'- --aGACAUCCGCCGCGCGCCUGGCCCc -3'
miRNA:   3'- gucCUGUAGGCGGCGCGCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 53017 0.7 0.327675
Target:  5'- -cGGugucugCUGUCGUGCGCCgggGGCCCg -3'
miRNA:   3'- guCCugua--GGCGGCGCGCGGa--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.