Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13128 | 5' | -56.8 | NC_003401.1 | + | 41013 | 0.66 | 0.864726 |
Target: 5'- aCGAaGCGucucguGCGA-GGUUGgGUGCAGCa -3' miRNA: 3'- -GCUcUGCu-----CGCUaCCGACgCGCGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 27693 | 0.66 | 0.864726 |
Target: 5'- gCGAGACcGGCGugGUGGCU-CGC-CGGCu -3' miRNA: 3'- -GCUCUGcUCGC--UACCGAcGCGcGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 119801 | 0.66 | 0.864726 |
Target: 5'- gGAGGCGgcgcAGCGGcaccgaGGCUaaacaGCGCGCAGg -3' miRNA: 3'- gCUCUGC----UCGCUa-----CCGA-----CGCGCGUUg -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 117870 | 0.66 | 0.849152 |
Target: 5'- aGAG-CGGcCGAUGGgUaCGCGCGGCg -3' miRNA: 3'- gCUCuGCUcGCUACCgAcGCGCGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 20457 | 0.66 | 0.841063 |
Target: 5'- gGAGGCGccAGCGuagGGCUGgcCGCcCAACa -3' miRNA: 3'- gCUCUGC--UCGCua-CCGAC--GCGcGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 20319 | 0.66 | 0.841063 |
Target: 5'- aGAGugGAGUGGUGGCacagGUaaacgaaccaGCGCu-- -3' miRNA: 3'- gCUCugCUCGCUACCGa---CG----------CGCGuug -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 119014 | 0.66 | 0.823458 |
Target: 5'- cCGAGGCGAG-GAgggcGGCgaUGCGCacgggggaucuccGCAACa -3' miRNA: 3'- -GCUCUGCUCgCUa---CCG--ACGCG-------------CGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 30213 | 0.67 | 0.815671 |
Target: 5'- aCGAcGugGGgGCGucUGGC-GCGCGCGAa -3' miRNA: 3'- -GCU-CugCU-CGCu-ACCGaCGCGCGUUg -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 22822 | 0.67 | 0.815671 |
Target: 5'- uCGAGGCGGGCccgGGCcGCGgGUAu- -3' miRNA: 3'- -GCUCUGCUCGcuaCCGaCGCgCGUug -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 121150 | 0.67 | 0.815671 |
Target: 5'- uCGcGGCGGGCGcgGGggGCGCGgGGg -3' miRNA: 3'- -GCuCUGCUCGCuaCCgaCGCGCgUUg -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 27527 | 0.67 | 0.815671 |
Target: 5'- uGAcACGGGgGccGGCUGUGCGCuGGCc -3' miRNA: 3'- gCUcUGCUCgCuaCCGACGCGCG-UUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 15031 | 0.67 | 0.815671 |
Target: 5'- -cAGGCgGGGCG-UGGC-GCGCGCGcACg -3' miRNA: 3'- gcUCUG-CUCGCuACCGaCGCGCGU-UG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 117882 | 0.67 | 0.806858 |
Target: 5'- --cGGCG-GCGGUGGCaccGCGC-CAGCg -3' miRNA: 3'- gcuCUGCuCGCUACCGa--CGCGcGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 96390 | 0.67 | 0.797885 |
Target: 5'- aCGAGugG-GCGGgcaaaGGCUcGuCGCGCAGg -3' miRNA: 3'- -GCUCugCuCGCUa----CCGA-C-GCGCGUUg -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 51596 | 0.67 | 0.770091 |
Target: 5'- uCGAGGCcucGC---GGUUGCGCGCAGCc -3' miRNA: 3'- -GCUCUGcu-CGcuaCCGACGCGCGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 119208 | 0.68 | 0.745088 |
Target: 5'- gCGAGAgccaccgaaaaaaggUGGGUGAcUGGUUGCGCcuGCGACc -3' miRNA: 3'- -GCUCU---------------GCUCGCU-ACCGACGCG--CGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 8919 | 0.68 | 0.745088 |
Target: 5'- aCGGGACGcaggcgcccuguggcGGCGAccGGCUGaCGCGCc-- -3' miRNA: 3'- -GCUCUGC---------------UCGCUa-CCGAC-GCGCGuug -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 32340 | 0.68 | 0.741176 |
Target: 5'- gGuGcCGGGCGGUGGC-GCGCGUc-- -3' miRNA: 3'- gCuCuGCUCGCUACCGaCGCGCGuug -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 123414 | 0.68 | 0.731333 |
Target: 5'- aGGGACGAGCcacuacguGGUGGgUGUGgugGCAGCg -3' miRNA: 3'- gCUCUGCUCG--------CUACCgACGCg--CGUUG- -5' |
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13128 | 5' | -56.8 | NC_003401.1 | + | 123722 | 0.68 | 0.721402 |
Target: 5'- aGAGuCGGGCGAU-GUUGC-CGUAGCg -3' miRNA: 3'- gCUCuGCUCGCUAcCGACGcGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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