miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13130 5' -53.6 NC_003401.1 + 132220 0.66 0.965752
Target:  5'- gGCGc--CCGGCcgGCGccGCCgCCGGg -3'
miRNA:   3'- aCGCucaGGCCGuaUGUuuUGG-GGCC- -5'
13130 5' -53.6 NC_003401.1 + 20363 0.66 0.96375
Target:  5'- cGCGGGgCCGaGUGUAUGAAcgccaugguucgcggGCUCCGGg -3'
miRNA:   3'- aCGCUCaGGC-CGUAUGUUU---------------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 28144 0.66 0.96237
Target:  5'- gGCGAGgaggUCGGCAUACAcaaGGACgUCa- -3'
miRNA:   3'- aCGCUCa---GGCCGUAUGU---UUUGgGGcc -5'
13130 5' -53.6 NC_003401.1 + 123361 0.66 0.96237
Target:  5'- gGCG-GUuuGGCcgcgGCGcgGCCCCuGGa -3'
miRNA:   3'- aCGCuCAggCCGua--UGUuuUGGGG-CC- -5'
13130 5' -53.6 NC_003401.1 + 44704 0.66 0.96237
Target:  5'- -cCGGGUCUGGUGUuuGCGGuuAACCCCa- -3'
miRNA:   3'- acGCUCAGGCCGUA--UGUU--UUGGGGcc -5'
13130 5' -53.6 NC_003401.1 + 21005 0.66 0.954925
Target:  5'- gGCGuAG-CUGGCGauguuaaACGGGACCCCGa -3'
miRNA:   3'- aCGC-UCaGGCCGUa------UGUUUUGGGGCc -5'
13130 5' -53.6 NC_003401.1 + 121768 0.66 0.950853
Target:  5'- gGCGA---CGGCGUugGAGAUCCCa- -3'
miRNA:   3'- aCGCUcagGCCGUAugUUUUGGGGcc -5'
13130 5' -53.6 NC_003401.1 + 26747 0.66 0.950853
Target:  5'- cGCG-GUgCGGCAUACGGuuuaacgugcAACUgCCGGu -3'
miRNA:   3'- aCGCuCAgGCCGUAUGUU----------UUGG-GGCC- -5'
13130 5' -53.6 NC_003401.1 + 39386 0.66 0.950853
Target:  5'- cGCGuGUCCugcuacgguGGCA-GCGAAcGCCCCGu -3'
miRNA:   3'- aCGCuCAGG---------CCGUaUGUUU-UGGGGCc -5'
13130 5' -53.6 NC_003401.1 + 98770 0.66 0.950853
Target:  5'- uUGCGAuaaCCugGGCGgacACGGGACCCUGGu -3'
miRNA:   3'- -ACGCUca-GG--CCGUa--UGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 111361 0.66 0.946541
Target:  5'- aUGCGAguGUCUGGCcgcACAcccGGACgCCGGu -3'
miRNA:   3'- -ACGCU--CAGGCCGua-UGU---UUUGgGGCC- -5'
13130 5' -53.6 NC_003401.1 + 29775 0.67 0.941988
Target:  5'- cGgGAuUCCGGCGUGgGAuuuugcguccgcGGCUCCGGc -3'
miRNA:   3'- aCgCUcAGGCCGUAUgUU------------UUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 50089 0.67 0.93719
Target:  5'- cGCGAcuggcuaaaUCCGGCAgGCGAAugaggGCCCaCGGu -3'
miRNA:   3'- aCGCUc--------AGGCCGUaUGUUU-----UGGG-GCC- -5'
13130 5' -53.6 NC_003401.1 + 13645 0.67 0.936697
Target:  5'- --aGAGUCCguucgggGGCAUGCucauGAUCCUGGu -3'
miRNA:   3'- acgCUCAGG-------CCGUAUGuu--UUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132497 0.67 0.932146
Target:  5'- cGCGGGcccgggCCGGCGggGCGGAGggCCGGg -3'
miRNA:   3'- aCGCUCa-----GGCCGUa-UGUUUUggGGCC- -5'
13130 5' -53.6 NC_003401.1 + 19597 0.67 0.932146
Target:  5'- cGCG-GUUCGGUGgcccgGCGAAACUgCGGc -3'
miRNA:   3'- aCGCuCAGGCCGUa----UGUUUUGGgGCC- -5'
13130 5' -53.6 NC_003401.1 + 64237 0.67 0.926855
Target:  5'- gGCG-GUaCCGGCAaccccgUACGGGACCCgGc -3'
miRNA:   3'- aCGCuCA-GGCCGU------AUGUUUUGGGgCc -5'
13130 5' -53.6 NC_003401.1 + 42814 0.67 0.926855
Target:  5'- uUGaGGGUCCuGUccugGUACGAGuCCCCGGg -3'
miRNA:   3'- -ACgCUCAGGcCG----UAUGUUUuGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 113156 0.68 0.915531
Target:  5'- aGCGGGUCaccaGGCAccUAAAuCgCCCGGg -3'
miRNA:   3'- aCGCUCAGg---CCGUauGUUUuG-GGGCC- -5'
13130 5' -53.6 NC_003401.1 + 20147 0.68 0.915531
Target:  5'- gUGCGugcGUUgGGaggGCAGAGcCCCCGGg -3'
miRNA:   3'- -ACGCu--CAGgCCguaUGUUUU-GGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.