miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13136 3' -60.4 NC_003401.1 + 79213 0.66 0.697623
Target:  5'- gACCcggUUUACUGUua-CGCaCCCGGCCACg -3'
miRNA:   3'- -UGG---AAGUGGUAcugGCG-GGGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 117767 0.66 0.697623
Target:  5'- aACCcgCggcgGCCAUGGUCGCCgCGGCCGu -3'
miRNA:   3'- -UGGaaG----UGGUACUGGCGGgGCCGGUg -5'
13136 3' -60.4 NC_003401.1 + 132363 0.66 0.697623
Target:  5'- gGCCgggCGCCu---CCgGgCCCGGCCGCu -3'
miRNA:   3'- -UGGaa-GUGGuacuGG-CgGGGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 56458 0.66 0.687687
Target:  5'- aGCCacggCACCAUGAaCGCCCgggaGGUgGCa -3'
miRNA:   3'- -UGGaa--GUGGUACUgGCGGGg---CCGgUG- -5'
13136 3' -60.4 NC_003401.1 + 64123 0.66 0.687687
Target:  5'- uGCCaccaCACCAccGAgCGCgCCCGcGCCACu -3'
miRNA:   3'- -UGGaa--GUGGUa-CUgGCG-GGGC-CGGUG- -5'
13136 3' -60.4 NC_003401.1 + 118596 0.66 0.677706
Target:  5'- cACCUUUgGCCGgccGGCCucugCCCGGCCACc -3'
miRNA:   3'- -UGGAAG-UGGUa--CUGGcg--GGGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 11683 0.66 0.677706
Target:  5'- -gUUUCGCgUGUGcAgCGCCUCGGCCACc -3'
miRNA:   3'- ugGAAGUG-GUAC-UgGCGGGGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 132412 0.66 0.667688
Target:  5'- gACCcUCGCCccgggcgcaagAUGGCgGCCgCGGCCcgGCg -3'
miRNA:   3'- -UGGaAGUGG-----------UACUGgCGGgGCCGG--UG- -5'
13136 3' -60.4 NC_003401.1 + 13503 0.66 0.667688
Target:  5'- gACCUgaACCGcGACCG-CCUGGcCCGCg -3'
miRNA:   3'- -UGGAagUGGUaCUGGCgGGGCC-GGUG- -5'
13136 3' -60.4 NC_003401.1 + 72366 0.66 0.657643
Target:  5'- cGCCUcCuCC-UGAgCGCCCCGuCCGCg -3'
miRNA:   3'- -UGGAaGuGGuACUgGCGGGGCcGGUG- -5'
13136 3' -60.4 NC_003401.1 + 62101 0.66 0.657643
Target:  5'- aACC-UCACCGUGACCGagUgGGUgACa -3'
miRNA:   3'- -UGGaAGUGGUACUGGCggGgCCGgUG- -5'
13136 3' -60.4 NC_003401.1 + 16299 0.66 0.651606
Target:  5'- gACCUgcgaacgcgucucggUCGCgagGUGACCGCCCgucaCGGCgCGCg -3'
miRNA:   3'- -UGGA---------------AGUGg--UACUGGCGGG----GCCG-GUG- -5'
13136 3' -60.4 NC_003401.1 + 132418 0.66 0.647578
Target:  5'- gGCCgggggUCccgcgggggGCCggGGCCGCCCCcggguGCCGCu -3'
miRNA:   3'- -UGGa----AG---------UGGuaCUGGCGGGGc----CGGUG- -5'
13136 3' -60.4 NC_003401.1 + 108831 0.66 0.647578
Target:  5'- aACUggCGCC--GACCGUCCCGuGCgGCa -3'
miRNA:   3'- -UGGaaGUGGuaCUGGCGGGGC-CGgUG- -5'
13136 3' -60.4 NC_003401.1 + 6056 0.66 0.645563
Target:  5'- cGCCUggauggauuaugUACCccuUGugUuauuuucaGCCCCGGCCACa -3'
miRNA:   3'- -UGGAa-----------GUGGu--ACugG--------CGGGGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 132474 0.67 0.637501
Target:  5'- gGCCgacUC-CCggGAgCGCCCCGGuCCGg -3'
miRNA:   3'- -UGGa--AGuGGuaCUgGCGGGGCC-GGUg -5'
13136 3' -60.4 NC_003401.1 + 132594 0.67 0.637501
Target:  5'- -gCggCACCcgggGGCgGCCCCGGCCc- -3'
miRNA:   3'- ugGaaGUGGua--CUGgCGGGGCCGGug -5'
13136 3' -60.4 NC_003401.1 + 105669 0.67 0.617342
Target:  5'- cGCCgucuaUCGUCGUGAgCGCCCaggugaCGGCCGCc -3'
miRNA:   3'- -UGGa----AGUGGUACUgGCGGG------GCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 22615 0.67 0.597226
Target:  5'- cACCagCGCCAcGcucGCCGUgCUCGGCCACg -3'
miRNA:   3'- -UGGaaGUGGUaC---UGGCG-GGGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 23698 0.67 0.597226
Target:  5'- uAUCUUCGCCAgcGCCaCCaCCGGCCu- -3'
miRNA:   3'- -UGGAAGUGGUacUGGcGG-GGCCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.