miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13148 3' -56.6 NC_003401.1 + 113580 1.1 0.002225
Target:  5'- cCCCCGGAACCCAAAGACACGUGCCCGu -3'
miRNA:   3'- -GGGGCCUUGGGUUUCUGUGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 116774 0.78 0.284287
Target:  5'- uCCCCGGuAGCCU--GGACccuuCGUGCCCGu -3'
miRNA:   3'- -GGGGCC-UUGGGuuUCUGu---GCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 83989 0.77 0.318767
Target:  5'- uUCUGGGACCCcGAGACgAUGUGCUCGg -3'
miRNA:   3'- gGGGCCUUGGGuUUCUG-UGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 25870 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26569 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26619 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26519 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26469 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26419 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26319 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26369 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26269 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 25820 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26169 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26119 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26069 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26019 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 25969 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 25920 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 26219 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.