miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13148 3' -56.6 NC_003401.1 + 6055 0.67 0.85756
Target:  5'- aCgCCGGAcaACCCcugGAAGAUAaucaggggucuCGUGCCCc -3'
miRNA:   3'- -GgGGCCU--UGGG---UUUCUGU-----------GCACGGGc -5'
13148 3' -56.6 NC_003401.1 + 118281 0.68 0.790598
Target:  5'- uCCCCGGcucccgAGCCCGGGGccCGCG-GaCCCGa -3'
miRNA:   3'- -GGGGCC------UUGGGUUUCu-GUGCaC-GGGC- -5'
13148 3' -56.6 NC_003401.1 + 113386 0.68 0.790598
Target:  5'- --aCGGAAUCCAAAGAaCAC--GCCCGa -3'
miRNA:   3'- gggGCCUUGGGUUUCU-GUGcaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 49255 0.68 0.798655
Target:  5'- gCCaCGGAAUCUGucgccauAAGGgACGUGCCUGg -3'
miRNA:   3'- gGG-GCCUUGGGU-------UUCUgUGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 133539 0.68 0.799543
Target:  5'- aCCCGGGccucucccccGCCCGGaccgccGGGCACccgGCCCa -3'
miRNA:   3'- gGGGCCU----------UGGGUU------UCUGUGca-CGGGc -5'
13148 3' -56.6 NC_003401.1 + 798 0.68 0.816979
Target:  5'- gUCCGaGGGCCagaCGAGGACACGgGaCCCGg -3'
miRNA:   3'- gGGGC-CUUGG---GUUUCUGUGCaC-GGGC- -5'
13148 3' -56.6 NC_003401.1 + 132208 0.67 0.833757
Target:  5'- -gCCGG-GCCCGGAGGCGCccgGCCgGc -3'
miRNA:   3'- ggGGCCuUGGGUUUCUGUGca-CGGgC- -5'
13148 3' -56.6 NC_003401.1 + 132539 0.67 0.833757
Target:  5'- gCCCGGGGCCCcacAAGcCGCG-GCgCGc -3'
miRNA:   3'- gGGGCCUUGGGu--UUCuGUGCaCGgGC- -5'
13148 3' -56.6 NC_003401.1 + 9236 0.67 0.849816
Target:  5'- -gCCGuGGACUauCGAGGACGCGggUGCCCu -3'
miRNA:   3'- ggGGC-CUUGG--GUUUCUGUGC--ACGGGc -5'
13148 3' -56.6 NC_003401.1 + 132491 0.68 0.781514
Target:  5'- gCCCCGGuccggccgAGCCCGgcGGCGcCGcGCCCc -3'
miRNA:   3'- -GGGGCC--------UUGGGUuuCUGU-GCaCGGGc -5'
13148 3' -56.6 NC_003401.1 + 132448 0.68 0.772298
Target:  5'- cCCCCGGGugCCGcuccGC-CGgGCCCGg -3'
miRNA:   3'- -GGGGCCUugGGUuuc-UGuGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 21324 0.68 0.772298
Target:  5'- uCCCCGaAGCCCugcgccgccaaAAAGGCGCGgGaCCCGu -3'
miRNA:   3'- -GGGGCcUUGGG-----------UUUCUGUGCaC-GGGC- -5'
13148 3' -56.6 NC_003401.1 + 49353 0.73 0.49371
Target:  5'- aCCCGGGccguugaACCCAcauccgcGAGAaacCGUGCCCGg -3'
miRNA:   3'- gGGGCCU-------UGGGU-------UUCUgu-GCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 123317 0.73 0.514781
Target:  5'- aCCCCGaaGACCUuGAGAacgcCACGUGCCUGg -3'
miRNA:   3'- -GGGGCc-UUGGGuUUCU----GUGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 117943 0.73 0.52448
Target:  5'- aUCUGGGGCCCAugguGGCGCGcgGCCCc -3'
miRNA:   3'- gGGGCCUUGGGUuu--CUGUGCa-CGGGc -5'
13148 3' -56.6 NC_003401.1 + 132670 0.72 0.583928
Target:  5'- -gCCGGGGCCCGGGGcGCcucgGCGggGCCCGg -3'
miRNA:   3'- ggGGCCUUGGGUUUC-UG----UGCa-CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 117985 0.71 0.624317
Target:  5'- uCCCaCGGuuuGCUCAuGGGCACcgacgGUGCCCGu -3'
miRNA:   3'- -GGG-GCCu--UGGGUuUCUGUG-----CACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 21510 0.69 0.714741
Target:  5'- gCCUGaAGCCCGAacacGGAcCugGUGCCCa -3'
miRNA:   3'- gGGGCcUUGGGUU----UCU-GugCACGGGc -5'
13148 3' -56.6 NC_003401.1 + 107627 0.69 0.753508
Target:  5'- cUCCCGGGuccgccGCCaccGGGCGCGggGCCCa -3'
miRNA:   3'- -GGGGCCU------UGGguuUCUGUGCa-CGGGc -5'
13148 3' -56.6 NC_003401.1 + 32291 0.68 0.77137
Target:  5'- aCCCGGAcGCCCuguauGCACauccgagGUGCCCGc -3'
miRNA:   3'- gGGGCCU-UGGGuuuc-UGUG-------CACGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.