miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13148 3' -56.6 NC_003401.1 + 798 0.68 0.816979
Target:  5'- gUCCGaGGGCCagaCGAGGACACGgGaCCCGg -3'
miRNA:   3'- gGGGC-CUUGG---GUUUCUGUGCaC-GGGC- -5'
13148 3' -56.6 NC_003401.1 + 6055 0.67 0.85756
Target:  5'- aCgCCGGAcaACCCcugGAAGAUAaucaggggucuCGUGCCCc -3'
miRNA:   3'- -GgGGCCU--UGGG---UUUCUGU-----------GCACGGGc -5'
13148 3' -56.6 NC_003401.1 + 8811 0.66 0.886479
Target:  5'- gCCgCGGAGCCCA---GCACGUGgggguauucCUCGg -3'
miRNA:   3'- -GGgGCCUUGGGUuucUGUGCAC---------GGGC- -5'
13148 3' -56.6 NC_003401.1 + 9236 0.67 0.849816
Target:  5'- -gCCGuGGACUauCGAGGACGCGggUGCCCu -3'
miRNA:   3'- ggGGC-CUUGG--GUUUCUGUGC--ACGGGc -5'
13148 3' -56.6 NC_003401.1 + 12235 0.67 0.85756
Target:  5'- uCCCCGuucuGCCaCAAcGACucaACGUGCUCGg -3'
miRNA:   3'- -GGGGCcu--UGG-GUUuCUG---UGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 14229 0.68 0.816979
Target:  5'- aCCgCGGAcGCCCGGGGGCGCuagaggGUGUCgGg -3'
miRNA:   3'- -GGgGCCU-UGGGUUUCUGUG------CACGGgC- -5'
13148 3' -56.6 NC_003401.1 + 14516 0.66 0.899
Target:  5'- cUCCUGGGGCgaaCCGAGGACggcaccaGCGUGUgCGu -3'
miRNA:   3'- -GGGGCCUUG---GGUUUCUG-------UGCACGgGC- -5'
13148 3' -56.6 NC_003401.1 + 17668 0.66 0.892511
Target:  5'- gCUCGGAGggcacCCCAAAGcccaccuGCGCGaccgaaagccUGCCCGg -3'
miRNA:   3'- gGGGCCUU-----GGGUUUC-------UGUGC----------ACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 18886 0.66 0.89317
Target:  5'- uCCCCGaucGCCCAGAGugGCGcugGCaaaggcgaagCCGg -3'
miRNA:   3'- -GGGGCcu-UGGGUUUCugUGCa--CG----------GGC- -5'
13148 3' -56.6 NC_003401.1 + 19138 0.67 0.85756
Target:  5'- gCCUGGAGCCCuccuGGcuGCACGcGUCUGu -3'
miRNA:   3'- gGGGCCUUGGGuu--UC--UGUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 20286 0.69 0.724559
Target:  5'- -gCUGGAcgacgcGCCCGGGGACGCGgacGCCgCGg -3'
miRNA:   3'- ggGGCCU------UGGGUUUCUGUGCa--CGG-GC- -5'
13148 3' -56.6 NC_003401.1 + 20385 0.66 0.865103
Target:  5'- cCCCUGGu-CCUgucaagAGAGGCGCGguugccgGCCCa -3'
miRNA:   3'- -GGGGCCuuGGG------UUUCUGUGCa------CGGGc -5'
13148 3' -56.6 NC_003401.1 + 21324 0.68 0.772298
Target:  5'- uCCCCGaAGCCCugcgccgccaaAAAGGCGCGgGaCCCGu -3'
miRNA:   3'- -GGGGCcUUGGG-----------UUUCUGUGCaC-GGGC- -5'
13148 3' -56.6 NC_003401.1 + 21510 0.69 0.714741
Target:  5'- gCCUGaAGCCCGAacacGGAcCugGUGCCCa -3'
miRNA:   3'- gGGGCcUUGGGUU----UCU-GugCACGGGc -5'
13148 3' -56.6 NC_003401.1 + 21810 0.66 0.879568
Target:  5'- aCUCCGGGuuuuuuccgcACCCGAAGGugcCGCGgccGUCCGc -3'
miRNA:   3'- -GGGGCCU----------UGGGUUUCU---GUGCa--CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 21831 0.66 0.872441
Target:  5'- --gCGGGGCcgaCCAcAGGCGCG-GCCCGg -3'
miRNA:   3'- gggGCCUUG---GGUuUCUGUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 22834 0.68 0.799543
Target:  5'- gCCUGGuuUCCGucGAgGCGgGCCCGg -3'
miRNA:   3'- gGGGCCuuGGGUuuCUgUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 22924 0.71 0.624317
Target:  5'- aCCCCGGGGCgaCCGuaguuAGACAC--GCCCGu -3'
miRNA:   3'- -GGGGCCUUG--GGUu----UCUGUGcaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 25670 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 25720 0.75 0.431305
Target:  5'- gCCCGGGACCCucGGGgaACGgggaGCCCGg -3'
miRNA:   3'- gGGGCCUUGGGuuUCUg-UGCa---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.