Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13156 | 5' | -50.4 | NC_003401.1 | + | 42541 | 0.66 | 0.995734 |
Target: 5'- cGGaCGGCGGUCAUC---GCAaa--GCCc -3' miRNA: 3'- -CC-GCCGCCAGUAGucuUGUauagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 118258 | 0.66 | 0.995734 |
Target: 5'- aGCGGU-GUCAgCGGAACAUAUUcuccCCg -3' miRNA: 3'- cCGCCGcCAGUaGUCUUGUAUAGu---GG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 88416 | 0.66 | 0.995528 |
Target: 5'- -cUGGCGGUuaccucguugcguaCGUCcaGGAGCAUGcCGCCg -3' miRNA: 3'- ccGCCGCCA--------------GUAG--UCUUGUAUaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 127483 | 0.66 | 0.995017 |
Target: 5'- cGUGGCGGUCAguuggcUCAGAAUgguugGUGgaaGCUg -3' miRNA: 3'- cCGCCGCCAGU------AGUCUUG-----UAUag-UGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 28198 | 0.66 | 0.995017 |
Target: 5'- aGGCGGCGGUaucCAcGAugGaUA-CGCCg -3' miRNA: 3'- -CCGCCGCCAguaGU-CUugU-AUaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 125693 | 0.66 | 0.993289 |
Target: 5'- uGGUgaaGGCGGcCAUCAGcgcccugggaAGCGgggCACCg -3' miRNA: 3'- -CCG---CCGCCaGUAGUC----------UUGUauaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 20083 | 0.67 | 0.986847 |
Target: 5'- gGGCGGacagcaccaCGGUCAccgCGGAGCcaAUgGCCg -3' miRNA: 3'- -CCGCC---------GCCAGUa--GUCUUGuaUAgUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 83604 | 0.67 | 0.986847 |
Target: 5'- uGUGGUGGUCuGUCAGGACGa---GCUg -3' miRNA: 3'- cCGCCGCCAG-UAGUCUUGUauagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 132675 | 0.67 | 0.986847 |
Target: 5'- gGGCccGGgGGgCGUCGGGGCGcggCGCCg -3' miRNA: 3'- -CCG--CCgCCaGUAGUCUUGUauaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 13660 | 0.67 | 0.985121 |
Target: 5'- gGGCcaGGCGGUCGcgguUCAGGucgauCGUGUUGuCCa -3' miRNA: 3'- -CCG--CCGCCAGU----AGUCUu----GUAUAGU-GG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 7527 | 0.67 | 0.986847 |
Target: 5'- uGGCGGCGGUgccgaCAUaauGGAcCAUGUuaaaCGCCu -3' miRNA: 3'- -CCGCCGCCA-----GUAg--UCUuGUAUA----GUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 11750 | 0.67 | 0.989834 |
Target: 5'- cGCGGUGGUgGUCgcgcccuuggGGGugGUGacguuuUCGCCa -3' miRNA: 3'- cCGCCGCCAgUAG----------UCUugUAU------AGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 88454 | 0.67 | 0.988415 |
Target: 5'- gGGCGGuUGGUUG--GGAACAUggaggucggGUCGCCc -3' miRNA: 3'- -CCGCC-GCCAGUagUCUUGUA---------UAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 91077 | 0.67 | 0.985121 |
Target: 5'- aGGUGGCGuuuguUCAcUCAGAGCGcugcgGUCACa -3' miRNA: 3'- -CCGCCGCc----AGU-AGUCUUGUa----UAGUGg -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 43203 | 0.67 | 0.988415 |
Target: 5'- cGUGGUGGUCAaCGGAACggauGUGUUucuagaacaACCg -3' miRNA: 3'- cCGCCGCCAGUaGUCUUG----UAUAG---------UGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 14914 | 0.67 | 0.989698 |
Target: 5'- aGGCGGUcgcugagGGUCG--AGAGCAUGgaACCg -3' miRNA: 3'- -CCGCCG-------CCAGUagUCUUGUAUagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 12021 | 0.68 | 0.976451 |
Target: 5'- -aCGGCGGUC-UCGGuccacccucGAUAgacgGUCACCg -3' miRNA: 3'- ccGCCGCCAGuAGUC---------UUGUa---UAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 11181 | 0.68 | 0.981157 |
Target: 5'- aGGgGGcCGGUUAUCAGGcCGUAaaACUg -3' miRNA: 3'- -CCgCC-GCCAGUAGUCUuGUAUagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 117986 | 0.68 | 0.981157 |
Target: 5'- -cCGGCGGUCAgc-GAAUaAUGUUGCCg -3' miRNA: 3'- ccGCCGCCAGUaguCUUG-UAUAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 105495 | 0.68 | 0.973798 |
Target: 5'- gGGUGGCGGcCGUCAccuGGGCGc-UCACg -3' miRNA: 3'- -CCGCCGCCaGUAGU---CUUGUauAGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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