Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13156 | 5' | -50.4 | NC_003401.1 | + | 17377 | 0.69 | 0.957241 |
Target: 5'- uGGUGGCGGUCuccGUUGGucGCuccUCGCCg -3' miRNA: 3'- -CCGCCGCCAG---UAGUCu-UGuauAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 83604 | 0.67 | 0.986847 |
Target: 5'- uGUGGUGGUCuGUCAGGACGa---GCUg -3' miRNA: 3'- cCGCCGCCAG-UAGUCUUGUauagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 118381 | 1.15 | 0.00434 |
Target: 5'- aGGCGGCGGUCAUCAGAACAUAUCACCc -3' miRNA: 3'- -CCGCCGCCAGUAGUCUUGUAUAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 18487 | 0.75 | 0.754387 |
Target: 5'- cGCGGCGcGUCGUCggcGGAGCuuaAUcgCACCa -3' miRNA: 3'- cCGCCGC-CAGUAG---UCUUG---UAuaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 9119 | 0.73 | 0.846518 |
Target: 5'- aGGCGGUcgauaaugggGGUCAUCAuGACGUGUCuCUu -3' miRNA: 3'- -CCGCCG----------CCAGUAGUcUUGUAUAGuGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 70729 | 0.72 | 0.892345 |
Target: 5'- cGCGGaCGGUCuuUUAGAACAcg-CGCCc -3' miRNA: 3'- cCGCC-GCCAGu-AGUCUUGUauaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 128395 | 0.7 | 0.934152 |
Target: 5'- cGCcGCGGUgAUgcucccguuacaaCGGAACAUAUUACCg -3' miRNA: 3'- cCGcCGCCAgUA-------------GUCUUGUAUAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 8512 | 0.7 | 0.934668 |
Target: 5'- cGCGGCGGUCuugguGUCggGGAACAgcgCGCg -3' miRNA: 3'- cCGCCGCCAG-----UAG--UCUUGUauaGUGg -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 36314 | 0.7 | 0.948964 |
Target: 5'- aGGCGGCGGgcccgUAUCAGAGagaAUAcuUCGaauCCa -3' miRNA: 3'- -CCGCCGCCa----GUAGUCUUg--UAU--AGU---GG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 132675 | 0.67 | 0.986847 |
Target: 5'- gGGCccGGgGGgCGUCGGGGCGcggCGCCg -3' miRNA: 3'- -CCG--CCgCCaGUAGUCUUGUauaGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 117986 | 0.68 | 0.981157 |
Target: 5'- -cCGGCGGUCAgc-GAAUaAUGUUGCCg -3' miRNA: 3'- ccGCCGCCAGUaguCUUG-UAUAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 11181 | 0.68 | 0.981157 |
Target: 5'- aGGgGGcCGGUUAUCAGGcCGUAaaACUg -3' miRNA: 3'- -CCgCC-GCCAGUAGUCUuGUAUagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 117929 | 0.69 | 0.961014 |
Target: 5'- gGGCGGCGGg-GUCGcGGCGagGUCACg -3' miRNA: 3'- -CCGCCGCCagUAGUcUUGUa-UAGUGg -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 91077 | 0.67 | 0.985121 |
Target: 5'- aGGUGGCGuuuguUCAcUCAGAGCGcugcgGUCACa -3' miRNA: 3'- -CCGCCGCc----AGU-AGUCUUGUa----UAGUGg -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 103286 | 0.69 | 0.961014 |
Target: 5'- cGGCGGUGGcC-UCGG-ACGgcgGUCGCUc -3' miRNA: 3'- -CCGCCGCCaGuAGUCuUGUa--UAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 12021 | 0.68 | 0.976451 |
Target: 5'- -aCGGCGGUC-UCGGuccacccucGAUAgacgGUCACCg -3' miRNA: 3'- ccGCCGCCAGuAGUC---------UUGUa---UAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 13660 | 0.67 | 0.985121 |
Target: 5'- gGGCcaGGCGGUCGcgguUCAGGucgauCGUGUUGuCCa -3' miRNA: 3'- -CCG--CCGCCAGU----AGUCUu----GUAUAGU-GG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 42541 | 0.66 | 0.995734 |
Target: 5'- cGGaCGGCGGUCAUC---GCAaa--GCCc -3' miRNA: 3'- -CC-GCCGCCAGUAGucuUGUauagUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 118205 | 0.69 | 0.970637 |
Target: 5'- uGGUGcGCaaaacgucgcccgGGUCAUCcGAgggucacugaaACAUAUCACCa -3' miRNA: 3'- -CCGC-CG-------------CCAGUAGuCU-----------UGUAUAGUGG- -5' |
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13156 | 5' | -50.4 | NC_003401.1 | + | 112206 | 0.69 | 0.970936 |
Target: 5'- uGGCGGCGcGUUAgggCAGAaaaaaacuGCGUGUCugaaACUa -3' miRNA: 3'- -CCGCCGC-CAGUa--GUCU--------UGUAUAG----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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