miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13191 3' -56.1 NC_003401.1 + 14202 1.12 0.001463
Target:  5'- uUCAGCCGCCACCAGACGUUUGCAGGCu -3'
miRNA:   3'- -AGUCGGCGGUGGUCUGCAAACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 119840 0.77 0.285319
Target:  5'- gCGGCCGCCACCagGGACGgggGCAGa- -3'
miRNA:   3'- aGUCGGCGGUGG--UCUGCaaaCGUCcg -5'
13191 3' -56.1 NC_003401.1 + 23605 0.76 0.33577
Target:  5'- aCGGCUGCCACCuGGCa---GCAGGCc -3'
miRNA:   3'- aGUCGGCGGUGGuCUGcaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 75102 0.75 0.383964
Target:  5'- cUUGGcCCGCCGCCuGGGCGcuugGCGGGCa -3'
miRNA:   3'- -AGUC-GGCGGUGG-UCUGCaaa-CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 90413 0.73 0.464319
Target:  5'- cCA-CCGCCAUCAGAagGUUUccGCAGGCa -3'
miRNA:   3'- aGUcGGCGGUGGUCUg-CAAA--CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 107634 0.73 0.493004
Target:  5'- gUCcGCCGCCACCGGGCGcg---GGGCc -3'
miRNA:   3'- -AGuCGGCGGUGGUCUGCaaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 89669 0.73 0.493004
Target:  5'- gUCAGCCuCCGCCGGAgCGggaggagGCAGGg -3'
miRNA:   3'- -AGUCGGcGGUGGUCU-GCaaa----CGUCCg -5'
13191 3' -56.1 NC_003401.1 + 107887 0.73 0.502747
Target:  5'- cUCGGCCGCC-CCGaGCGUUgccccGguGGCc -3'
miRNA:   3'- -AGUCGGCGGuGGUcUGCAAa----CguCCG- -5'
13191 3' -56.1 NC_003401.1 + 86714 0.72 0.536463
Target:  5'- gCAGCCGCU-CCAGGCGUucgaucucUUGCAuuauuugagggagcuGGCg -3'
miRNA:   3'- aGUCGGCGGuGGUCUGCA--------AACGU---------------CCG- -5'
13191 3' -56.1 NC_003401.1 + 15056 0.72 0.546532
Target:  5'- -gGGCCguccuggcaucucugGCCGCCAGGCGgg-GCGuGGCg -3'
miRNA:   3'- agUCGG---------------CGGUGGUCUGCaaaCGU-CCG- -5'
13191 3' -56.1 NC_003401.1 + 11250 0.72 0.552603
Target:  5'- cCGGCCGCCucgaaacacuggGCCAgcgcGACGUUgGCGGGg -3'
miRNA:   3'- aGUCGGCGG------------UGGU----CUGCAAaCGUCCg -5'
13191 3' -56.1 NC_003401.1 + 24754 0.72 0.562765
Target:  5'- -aAGCCGCagCGCgGGGCGUguuaaGCGGGCu -3'
miRNA:   3'- agUCGGCG--GUGgUCUGCAaa---CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 84193 0.72 0.562765
Target:  5'- cCAGCCGCCACCGuGCGUccGCAc-- -3'
miRNA:   3'- aGUCGGCGGUGGUcUGCAaaCGUccg -5'
13191 3' -56.1 NC_003401.1 + 119890 0.71 0.612112
Target:  5'- gCGGCCGCCGCCgAGuCGguugccaccaccUUGCGGGa -3'
miRNA:   3'- aGUCGGCGGUGG-UCuGCa-----------AACGUCCg -5'
13191 3' -56.1 NC_003401.1 + 17493 0.71 0.614182
Target:  5'- gUAGCCcCCgugGCCcuuGaACGUUUGCAGGCg -3'
miRNA:   3'- aGUCGGcGG---UGGu--C-UGCAAACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 120862 0.7 0.634897
Target:  5'- cCGGCUGCCaagaACCAGugGcgcUUGcCAGGUg -3'
miRNA:   3'- aGUCGGCGG----UGGUCugCa--AAC-GUCCG- -5'
13191 3' -56.1 NC_003401.1 + 119076 0.7 0.644221
Target:  5'- gCGGCCGgCACCGG-CGUUaaccgggUGCGuuGGCg -3'
miRNA:   3'- aGUCGGCgGUGGUCuGCAA-------ACGU--CCG- -5'
13191 3' -56.1 NC_003401.1 + 132388 0.7 0.645256
Target:  5'- gCGGCCGCgGCCcGGCGgcgGCGccGGCc -3'
miRNA:   3'- aGUCGGCGgUGGuCUGCaaaCGU--CCG- -5'
13191 3' -56.1 NC_003401.1 + 118340 0.7 0.655604
Target:  5'- --uGCCGCCGCCGGGguCGcccGCGGGUc -3'
miRNA:   3'- aguCGGCGGUGGUCU--GCaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 20699 0.7 0.665933
Target:  5'- cCGGCCGCCGCCc-GCGaUUGUAaGCg -3'
miRNA:   3'- aGUCGGCGGUGGucUGCaAACGUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.