miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13191 3' -56.1 NC_003401.1 + 770 0.67 0.838027
Target:  5'- -gGGCUGCCgGCCAGcuGCGUgcgaGGGCg -3'
miRNA:   3'- agUCGGCGG-UGGUC--UGCAaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 6005 0.68 0.794273
Target:  5'- --cGCaCGCCACguGACGUUa--AGGCg -3'
miRNA:   3'- aguCG-GCGGUGguCUGCAAacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 11250 0.72 0.552603
Target:  5'- cCGGCCGCCucgaaacacuggGCCAgcgcGACGUUgGCGGGg -3'
miRNA:   3'- aGUCGGCGG------------UGGU----CUGCAAaCGUCCg -5'
13191 3' -56.1 NC_003401.1 + 14202 1.12 0.001463
Target:  5'- uUCAGCCGCCACCAGACGUUUGCAGGCu -3'
miRNA:   3'- -AGUCGGCGGUGGUCUGCAAACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 14397 0.7 0.686497
Target:  5'- --cGCCuGCC-CCuGGCGUUcggagGCAGGCg -3'
miRNA:   3'- aguCGG-CGGuGGuCUGCAAa----CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 15056 0.72 0.546532
Target:  5'- -gGGCCguccuggcaucucugGCCGCCAGGCGgg-GCGuGGCg -3'
miRNA:   3'- agUCGG---------------CGGUGGUCUGCaaaCGU-CCG- -5'
13191 3' -56.1 NC_003401.1 + 17493 0.71 0.614182
Target:  5'- gUAGCCcCCgugGCCcuuGaACGUUUGCAGGCg -3'
miRNA:   3'- aGUCGGcGG---UGGu--C-UGCAAACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 18186 0.7 0.686497
Target:  5'- --cGCgGCCGCCGG-UGUggGUGGGCa -3'
miRNA:   3'- aguCGgCGGUGGUCuGCAaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 20699 0.7 0.665933
Target:  5'- cCGGCCGCCGCCc-GCGaUUGUAaGCg -3'
miRNA:   3'- aGUCGGCGGUGGucUGCaAACGUcCG- -5'
13191 3' -56.1 NC_003401.1 + 23528 0.66 0.88415
Target:  5'- --cGCCGCagaggagGCCGGugGUggcGCuGGCg -3'
miRNA:   3'- aguCGGCGg------UGGUCugCAaa-CGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 23605 0.76 0.33577
Target:  5'- aCGGCUGCCACCuGGCa---GCAGGCc -3'
miRNA:   3'- aGUCGGCGGUGGuCUGcaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 23635 0.68 0.746782
Target:  5'- aCGGgCGCCGCgAG-CGgccgGCAGGUg -3'
miRNA:   3'- aGUCgGCGGUGgUCuGCaaa-CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 23981 0.67 0.846234
Target:  5'- aUUGGCUGCCGCCAG-CGUccaauGGCc -3'
miRNA:   3'- -AGUCGGCGGUGGUCuGCAaacguCCG- -5'
13191 3' -56.1 NC_003401.1 + 24754 0.72 0.562765
Target:  5'- -aAGCCGCagCGCgGGGCGUguuaaGCGGGCu -3'
miRNA:   3'- agUCGGCG--GUGgUCUGCAaa---CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 27906 0.67 0.846234
Target:  5'- aCAGCCG-UACCAGAgCGc--GCAGGg -3'
miRNA:   3'- aGUCGGCgGUGGUCU-GCaaaCGUCCg -5'
13191 3' -56.1 NC_003401.1 + 35394 0.68 0.794273
Target:  5'- aCAGCCGCCaaaaACCAGACGcuccUUGU--GCc -3'
miRNA:   3'- aGUCGGCGG----UGGUCUGCa---AACGucCG- -5'
13191 3' -56.1 NC_003401.1 + 39229 0.67 0.838027
Target:  5'- --cGCUGCCACCguagcaGGACac--GCGGGCa -3'
miRNA:   3'- aguCGGCGGUGG------UCUGcaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 41177 0.7 0.676233
Target:  5'- aCGGCCGCCGCUc--UGUcaaacUGCAGGCc -3'
miRNA:   3'- aGUCGGCGGUGGucuGCAa----ACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 42282 0.67 0.802458
Target:  5'- -uGGCCGCCACCAGGgGaucgcUGUAcagcuuggugaacGGCa -3'
miRNA:   3'- agUCGGCGGUGGUCUgCaa---ACGU-------------CCG- -5'
13191 3' -56.1 NC_003401.1 + 49066 0.66 0.869633
Target:  5'- cCGGgaGCaccaGCCAGGCGgucaggGUAGGCg -3'
miRNA:   3'- aGUCggCGg---UGGUCUGCaaa---CGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.