miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13191 3' -56.1 NC_003401.1 + 125668 0.67 0.838027
Target:  5'- aCGGCCGCgacgucgaACCcGACGUUgGUgaAGGCg -3'
miRNA:   3'- aGUCGGCGg-------UGGuCUGCAAaCG--UCCG- -5'
13191 3' -56.1 NC_003401.1 + 23635 0.68 0.746782
Target:  5'- aCGGgCGCCGCgAG-CGgccgGCAGGUg -3'
miRNA:   3'- aGUCgGCGGUGgUCuGCaaa-CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 68526 0.68 0.753613
Target:  5'- -gGGCCGCCACCuGuaACGUcccgUGCgcagaaugcgcccaGGGCa -3'
miRNA:   3'- agUCGGCGGUGGuC--UGCAa---ACG--------------UCCG- -5'
13191 3' -56.1 NC_003401.1 + 68100 0.67 0.812286
Target:  5'- -gGGuuGCCGCUugguAGAgCGgaUUGCGGGCa -3'
miRNA:   3'- agUCggCGGUGG----UCU-GCa-AACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 132375 0.67 0.812286
Target:  5'- cCGGCCGCCccgcgccgcgcGCCGGGCcgcuuucgGUUcGCGGGg -3'
miRNA:   3'- aGUCGGCGG-----------UGGUCUG--------CAAaCGUCCg -5'
13191 3' -56.1 NC_003401.1 + 103923 0.67 0.81581
Target:  5'- gCGGCCGaacggcuccgccaauCCACCcguGACGagaucGCAGGCa -3'
miRNA:   3'- aGUCGGC---------------GGUGGu--CUGCaaa--CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 770 0.67 0.838027
Target:  5'- -gGGCUGCCgGCCAGcuGCGUgcgaGGGCg -3'
miRNA:   3'- agUCGGCGG-UGGUC--UGCAaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 133485 0.67 0.838027
Target:  5'- -gGGCUGCCgGCCAGcuGCGUgcgaGGGCg -3'
miRNA:   3'- agUCGGCGG-UGGUC--UGCAaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 39229 0.67 0.838027
Target:  5'- --cGCUGCCACCguagcaGGACac--GCGGGCa -3'
miRNA:   3'- aguCGGCGGUGG------UCUGcaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 132233 0.69 0.736936
Target:  5'- --cGCCGCCGCCGGGCc---GC-GGCc -3'
miRNA:   3'- aguCGGCGGUGGUCUGcaaaCGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 132582 0.69 0.716974
Target:  5'- gCGGCCGCCGCCcggcauGGCGguccuccGCcGGCc -3'
miRNA:   3'- aGUCGGCGGUGGu-----CUGCaaa----CGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 66740 0.69 0.71496
Target:  5'- aCAGCCGCaCGCCAGuuccagaGCgAGGCa -3'
miRNA:   3'- aGUCGGCG-GUGGUCugcaaa-CG-UCCG- -5'
13191 3' -56.1 NC_003401.1 + 119840 0.77 0.285319
Target:  5'- gCGGCCGCCACCagGGACGgggGCAGa- -3'
miRNA:   3'- aGUCGGCGGUGG--UCUGCaaaCGUCcg -5'
13191 3' -56.1 NC_003401.1 + 23605 0.76 0.33577
Target:  5'- aCGGCUGCCACCuGGCa---GCAGGCc -3'
miRNA:   3'- aGUCGGCGGUGGuCUGcaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 90413 0.73 0.464319
Target:  5'- cCA-CCGCCAUCAGAagGUUUccGCAGGCa -3'
miRNA:   3'- aGUcGGCGGUGGUCUg-CAAA--CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 89669 0.73 0.493004
Target:  5'- gUCAGCCuCCGCCGGAgCGggaggagGCAGGg -3'
miRNA:   3'- -AGUCGGcGGUGGUCU-GCaaa----CGUCCg -5'
13191 3' -56.1 NC_003401.1 + 107634 0.73 0.493004
Target:  5'- gUCcGCCGCCACCGGGCGcg---GGGCc -3'
miRNA:   3'- -AGuCGGCGGUGGUCUGCaaacgUCCG- -5'
13191 3' -56.1 NC_003401.1 + 84193 0.72 0.562765
Target:  5'- cCAGCCGCCACCGuGCGUccGCAc-- -3'
miRNA:   3'- aGUCGGCGGUGGUcUGCAaaCGUccg -5'
13191 3' -56.1 NC_003401.1 + 119076 0.7 0.644221
Target:  5'- gCGGCCGgCACCGG-CGUUaaccgggUGCGuuGGCg -3'
miRNA:   3'- aGUCGGCgGUGGUCuGCAA-------ACGU--CCG- -5'
13191 3' -56.1 NC_003401.1 + 118231 0.7 0.676233
Target:  5'- uUCugauGaCCGCCGCCuuACGUUUGCAgcGGUg -3'
miRNA:   3'- -AGu---C-GGCGGUGGucUGCAAACGU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.