miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13248 5' -61.1 NC_003401.1 + 132651 0.66 0.702019
Target:  5'- cCGCGcCGCCgGGAgggggGCCGGggcCCGGggCg -3'
miRNA:   3'- -GCGU-GUGGgCCUg----CGGCCa--GGCCaaG- -5'
13248 5' -61.1 NC_003401.1 + 132220 0.66 0.702019
Target:  5'- --gGCGCCCGGccgGCGCCGccgCCGGg-- -3'
miRNA:   3'- gcgUGUGGGCC---UGCGGCca-GGCCaag -5'
13248 5' -61.1 NC_003401.1 + 112128 0.66 0.702019
Target:  5'- cCGU--GCCUGGAUGCCGGUCgCGuGg-- -3'
miRNA:   3'- -GCGugUGGGCCUGCGGCCAG-GC-Caag -5'
13248 5' -61.1 NC_003401.1 + 14808 0.66 0.672752
Target:  5'- aGUcaaACgUGGACGCCGuucgCCGGUUCg -3'
miRNA:   3'- gCGug-UGgGCCUGCGGCca--GGCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 105713 0.66 0.662924
Target:  5'- uGCAU-CUCGGgucaaucgacgACGCCGGUCCaGGcUUCa -3'
miRNA:   3'- gCGUGuGGGCC-----------UGCGGCCAGG-CC-AAG- -5'
13248 5' -61.1 NC_003401.1 + 132515 0.66 0.653073
Target:  5'- gCGcCGCGCCCcGACGCCccccgGGcCCGGggCc -3'
miRNA:   3'- -GC-GUGUGGGcCUGCGG-----CCaGGCCaaG- -5'
13248 5' -61.1 NC_003401.1 + 50016 0.66 0.653073
Target:  5'- uCGCACacaucagcgaACUCGGcCGCCG-UCCGGggCu -3'
miRNA:   3'- -GCGUG----------UGGGCCuGCGGCcAGGCCaaG- -5'
13248 5' -61.1 NC_003401.1 + 104950 0.67 0.643207
Target:  5'- cCGUGCGCCgGGACGUgaguUGGuuuuUCCGGaUCg -3'
miRNA:   3'- -GCGUGUGGgCCUGCG----GCC----AGGCCaAG- -5'
13248 5' -61.1 NC_003401.1 + 133554 0.67 0.643207
Target:  5'- ---cCGCCCGGAcCGCCGGgcacCCGGc-- -3'
miRNA:   3'- gcguGUGGGCCU-GCGGCCa---GGCCaag -5'
13248 5' -61.1 NC_003401.1 + 14044 0.67 0.613587
Target:  5'- uCGCGCACCCG---GCCGGUCCc---- -3'
miRNA:   3'- -GCGUGUGGGCcugCGGCCAGGccaag -5'
13248 5' -61.1 NC_003401.1 + 118265 0.67 0.593894
Target:  5'- uGC-CGCCCGGGguCGCCGG-CgGGUc- -3'
miRNA:   3'- gCGuGUGGGCCU--GCGGCCaGgCCAag -5'
13248 5' -61.1 NC_003401.1 + 107382 0.68 0.564565
Target:  5'- gGCGgucCACCUGGA-GUC-GUCCGGUUCg -3'
miRNA:   3'- gCGU---GUGGGCCUgCGGcCAGGCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 69884 0.68 0.53563
Target:  5'- aCGCGCAuCCCGGACGgucCCGGgaaagggUGGUUUa -3'
miRNA:   3'- -GCGUGU-GGGCCUGC---GGCCag-----GCCAAG- -5'
13248 5' -61.1 NC_003401.1 + 132652 0.68 0.53563
Target:  5'- gGCGC-CgCCGGGCucgGCCGGaCCGGggCg -3'
miRNA:   3'- gCGUGuG-GGCCUG---CGGCCaGGCCaaG- -5'
13248 5' -61.1 NC_003401.1 + 132299 0.68 0.53563
Target:  5'- cCGCGCGCCgGGcgcCGCCGGccucccCCGGcUCc -3'
miRNA:   3'- -GCGUGUGGgCCu--GCGGCCa-----GGCCaAG- -5'
13248 5' -61.1 NC_003401.1 + 88518 0.69 0.526098
Target:  5'- aCGCgGCACCUGuuaGGCGCCGGcgCCgacaGGUUCu -3'
miRNA:   3'- -GCG-UGUGGGC---CUGCGGCCa-GG----CCAAG- -5'
13248 5' -61.1 NC_003401.1 + 14686 0.69 0.526098
Target:  5'- aCGCACACgCUGG-UGCCG-UCCucGGUUCg -3'
miRNA:   3'- -GCGUGUG-GGCCuGCGGCcAGG--CCAAG- -5'
13248 5' -61.1 NC_003401.1 + 19644 0.69 0.51663
Target:  5'- uCGCGCGCCCuGGAgcUGCCGGg-CGGg-- -3'
miRNA:   3'- -GCGUGUGGG-CCU--GCGGCCagGCCaag -5'
13248 5' -61.1 NC_003401.1 + 17666 0.69 0.507232
Target:  5'- aGCACgaACCCGGgggccacgcGCGCCGcGUCCGcGUc- -3'
miRNA:   3'- gCGUG--UGGGCC---------UGCGGC-CAGGC-CAag -5'
13248 5' -61.1 NC_003401.1 + 79864 0.69 0.497907
Target:  5'- uGCagACGCCuCGGugGCCGGggCGGUc- -3'
miRNA:   3'- gCG--UGUGG-GCCugCGGCCagGCCAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.