miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13253 3' -49.8 NC_003401.1 + 113560 1.07 0.011701
Target:  5'- aCAAGCGGACCCAAAAAAACACCCCAAc -3'
miRNA:   3'- -GUUCGCCUGGGUUUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 107751 0.79 0.492003
Target:  5'- cCGAGcCGGACCCGGAcAAAACGCCCgAGa -3'
miRNA:   3'- -GUUC-GCCUGGGUUU-UUUUGUGGGgUU- -5'
13253 3' -49.8 NC_003401.1 + 32708 0.74 0.789861
Target:  5'- aCGAG-GGuCCCGAGAuuGCACCCCu- -3'
miRNA:   3'- -GUUCgCCuGGGUUUUuuUGUGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 28972 0.73 0.836447
Target:  5'- gCGAGCGG-CCCAGAuccAGCuaaACCCCAu -3'
miRNA:   3'- -GUUCGCCuGGGUUUuu-UUG---UGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 132464 0.72 0.853657
Target:  5'- --cGcCGGGCCCGGccgacucccGGGAGCGCCCCGGu -3'
miRNA:   3'- guuC-GCCUGGGUU---------UUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 36311 0.72 0.861921
Target:  5'- -cGGCGGGCCCGuaucagAGAGAAUACUUCGAa -3'
miRNA:   3'- guUCGCCUGGGU------UUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 109371 0.72 0.869948
Target:  5'- gCAAGCGG-CCCGAGGccAUcCCCCAAu -3'
miRNA:   3'- -GUUCGCCuGGGUUUUuuUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 132597 0.72 0.869948
Target:  5'- gGAGCGGcACCCGG--GGGCGgCCCCGg -3'
miRNA:   3'- gUUCGCC-UGGGUUuuUUUGU-GGGGUu -5'
13253 3' -49.8 NC_003401.1 + 5426 0.71 0.892532
Target:  5'- gAAGC--ACCCAAAccAAACACCCCAAa -3'
miRNA:   3'- gUUCGccUGGGUUUu-UUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 68588 0.71 0.892532
Target:  5'- gGAGaugGGACCCAGGGAGGCACauuCCAu -3'
miRNA:   3'- gUUCg--CCUGGGUUUUUUUGUGg--GGUu -5'
13253 3' -49.8 NC_003401.1 + 132835 0.71 0.899544
Target:  5'- --cGcCGGGCCCcgccGAGGCGCCCCGGg -3'
miRNA:   3'- guuC-GCCUGGGuuu-UUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 22627 0.71 0.899544
Target:  5'- uGAGCGGACCC------GCGCCCgAAc -3'
miRNA:   3'- gUUCGCCUGGGuuuuuuUGUGGGgUU- -5'
13253 3' -49.8 NC_003401.1 + 132436 0.71 0.90023
Target:  5'- --cGCGGGCCCGGGGGGcgcgcgggggacccuCGCCCCGGg -3'
miRNA:   3'- guuCGCCUGGGUUUUUUu--------------GUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 17657 0.7 0.918969
Target:  5'- -cGGCGGcGCgCGcucGGAGGGCACCCCAAa -3'
miRNA:   3'- guUCGCC-UGgGU---UUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 14959 0.7 0.9249
Target:  5'- uCAAGCGGACCgAGcGAcuGGC-CCCCGu -3'
miRNA:   3'- -GUUCGCCUGGgUUuUU--UUGuGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 30539 0.7 0.930556
Target:  5'- gGAGCuGGCCCAAAucacacccAGAuCGCCCCAc -3'
miRNA:   3'- gUUCGcCUGGGUUU--------UUUuGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 41529 0.69 0.950455
Target:  5'- --cGCGGGCCU------GCGCCCCAc -3'
miRNA:   3'- guuCGCCUGGGuuuuuuUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 107597 0.69 0.95476
Target:  5'- gAAGUGGACCCuaugccAGAAGACGCCa--- -3'
miRNA:   3'- gUUCGCCUGGGu-----UUUUUUGUGGgguu -5'
13253 3' -49.8 NC_003401.1 + 83870 0.69 0.962592
Target:  5'- --cGCGGAUgCAAAcGAACACCUCu- -3'
miRNA:   3'- guuCGCCUGgGUUUuUUUGUGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 109472 0.68 0.966131
Target:  5'- aGGGCGGGCCaCGGAGcccGuuCGCCUCAAc -3'
miRNA:   3'- gUUCGCCUGG-GUUUU---UuuGUGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.