miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13253 3' -49.8 NC_003401.1 + 5426 0.71 0.892532
Target:  5'- gAAGC--ACCCAAAccAAACACCCCAAa -3'
miRNA:   3'- gUUCGccUGGGUUUu-UUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 10105 0.68 0.966131
Target:  5'- --uGCGGGaUCGGGGAGAUACCCCGc -3'
miRNA:   3'- guuCGCCUgGGUUUUUUUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 14959 0.7 0.9249
Target:  5'- uCAAGCGGACCgAGcGAcuGGC-CCCCGu -3'
miRNA:   3'- -GUUCGCCUGGgUUuUU--UUGuGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 17509 0.67 0.986385
Target:  5'- gGAGuCGGACCCuggcguAGC-CCCCGu -3'
miRNA:   3'- gUUC-GCCUGGGuuuuu-UUGuGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 17657 0.7 0.918969
Target:  5'- -cGGCGGcGCgCGcucGGAGGGCACCCCAAa -3'
miRNA:   3'- guUCGCC-UGgGU---UUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 21318 0.68 0.969427
Target:  5'- -cGGCGGucCCCGAAGcccuGCGCCgCCAAa -3'
miRNA:   3'- guUCGCCu-GGGUUUUuu--UGUGG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 22627 0.71 0.899544
Target:  5'- uGAGCGGACCC------GCGCCCgAAc -3'
miRNA:   3'- gUUCGCCUGGGuuuuuuUGUGGGgUU- -5'
13253 3' -49.8 NC_003401.1 + 22820 0.67 0.981244
Target:  5'- gAGGCGGGCCCGGGccgcggguauuaauGGACGCCgUCAAc -3'
miRNA:   3'- gUUCGCCUGGGUUUu-------------UUUGUGG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 23158 0.67 0.982542
Target:  5'- --cGCgGGGCCCAAAGG---GCCCCGc -3'
miRNA:   3'- guuCG-CCUGGGUUUUUuugUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 28972 0.73 0.836447
Target:  5'- gCGAGCGG-CCCAGAuccAGCuaaACCCCAu -3'
miRNA:   3'- -GUUCGCCuGGGUUUuu-UUG---UGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 30539 0.7 0.930556
Target:  5'- gGAGCuGGCCCAAAucacacccAGAuCGCCCCAc -3'
miRNA:   3'- gUUCGcCUGGGUUU--------UUUuGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 32708 0.74 0.789861
Target:  5'- aCGAG-GGuCCCGAGAuuGCACCCCu- -3'
miRNA:   3'- -GUUCgCCuGGGUUUUuuUGUGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 36311 0.72 0.861921
Target:  5'- -cGGCGGGCCCGuaucagAGAGAAUACUUCGAa -3'
miRNA:   3'- guUCGCCUGGGU------UUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 41529 0.69 0.950455
Target:  5'- --cGCGGGCCU------GCGCCCCAc -3'
miRNA:   3'- guuCGCCUGGGuuuuuuUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 50506 0.67 0.988044
Target:  5'- aAAGC--ACCCGAAAAGACACaCCAGu -3'
miRNA:   3'- gUUCGccUGGGUUUUUUUGUGgGGUU- -5'
13253 3' -49.8 NC_003401.1 + 52284 0.68 0.972488
Target:  5'- gGAGCGucuGCCCAGAGug-UGCCCCAAa -3'
miRNA:   3'- gUUCGCc--UGGGUUUUuuuGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 53016 0.66 0.989542
Target:  5'- gAGGCGGACCCu---AGAU-CUCCGAu -3'
miRNA:   3'- gUUCGCCUGGGuuuuUUUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 53349 0.67 0.988044
Target:  5'- uGGGCGGAUUCGGAGgAAGCGuCCgCCAAc -3'
miRNA:   3'- gUUCGCCUGGGUUUU-UUUGU-GG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 58305 0.66 0.994038
Target:  5'- aGGGUGGguaagauACCCGcc--AGCGCCCCAAu -3'
miRNA:   3'- gUUCGCC-------UGGGUuuuuUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 68588 0.71 0.892532
Target:  5'- gGAGaugGGACCCAGGGAGGCACauuCCAu -3'
miRNA:   3'- gUUCg--CCUGGGUUUUUUUGUGg--GGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.