miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13253 3' -49.8 NC_003401.1 + 113560 1.07 0.011701
Target:  5'- aCAAGCGGACCCAAAAAAACACCCCAAc -3'
miRNA:   3'- -GUUCGCCUGGGUUUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 52284 0.68 0.972488
Target:  5'- gGAGCGucuGCCCAGAGug-UGCCCCAAa -3'
miRNA:   3'- gUUCGCc--UGGGUUUUuuuGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 132206 0.68 0.972488
Target:  5'- -cGGcCGGGCCCGGAG--GCGCCCg-- -3'
miRNA:   3'- guUC-GCCUGGGUUUUuuUGUGGGguu -5'
13253 3' -49.8 NC_003401.1 + 129949 0.68 0.975321
Target:  5'- uGAGUaGGCCCAAGAAAAUgauaaACCCUAu -3'
miRNA:   3'- gUUCGcCUGGGUUUUUUUG-----UGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 69947 0.67 0.986385
Target:  5'- -uAGCGGccacggaucGCCuUGAAAGAugACCCCAAg -3'
miRNA:   3'- guUCGCC---------UGG-GUUUUUUugUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 112103 0.67 0.986385
Target:  5'- --uGgGGACCCcGAuauGCACCUCAAa -3'
miRNA:   3'- guuCgCCUGGGuUUuuuUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 72605 0.66 0.99089
Target:  5'- gGAGcCGGACCUGGugGGAU-CCCCAGa -3'
miRNA:   3'- gUUC-GCCUGGGUUuuUUUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 132667 0.66 0.992096
Target:  5'- gGGGCcgGGGCCCG---GGGCGCCUCGg -3'
miRNA:   3'- gUUCG--CCUGGGUuuuUUUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 118257 0.66 0.992096
Target:  5'- -cAGCGGugUCAGcgGAACAuauucuCCCCGg -3'
miRNA:   3'- guUCGCCugGGUUuuUUUGU------GGGGUu -5'
13253 3' -49.8 NC_003401.1 + 113381 0.68 0.969427
Target:  5'- aCGAGaCGGaAUCCAAA-GAACACgCCCGAu -3'
miRNA:   3'- -GUUC-GCC-UGGGUUUuUUUGUG-GGGUU- -5'
13253 3' -49.8 NC_003401.1 + 21318 0.68 0.969427
Target:  5'- -cGGCGGucCCCGAAGcccuGCGCCgCCAAa -3'
miRNA:   3'- guUCGCCu-GGGUUUUuu--UGUGG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 109472 0.68 0.966131
Target:  5'- aGGGCGGGCCaCGGAGcccGuuCGCCUCAAc -3'
miRNA:   3'- gUUCGCCUGG-GUUUU---UuuGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 107751 0.79 0.492003
Target:  5'- cCGAGcCGGACCCGGAcAAAACGCCCgAGa -3'
miRNA:   3'- -GUUC-GCCUGGGUUU-UUUUGUGGGgUU- -5'
13253 3' -49.8 NC_003401.1 + 132464 0.72 0.853657
Target:  5'- --cGcCGGGCCCGGccgacucccGGGAGCGCCCCGGu -3'
miRNA:   3'- guuC-GCCUGGGUU---------UUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 109371 0.72 0.869948
Target:  5'- gCAAGCGG-CCCGAGGccAUcCCCCAAu -3'
miRNA:   3'- -GUUCGCCuGGGUUUUuuUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 5426 0.71 0.892532
Target:  5'- gAAGC--ACCCAAAccAAACACCCCAAa -3'
miRNA:   3'- gUUCGccUGGGUUUu-UUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 17657 0.7 0.918969
Target:  5'- -cGGCGGcGCgCGcucGGAGGGCACCCCAAa -3'
miRNA:   3'- guUCGCC-UGgGU---UUUUUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 14959 0.7 0.9249
Target:  5'- uCAAGCGGACCgAGcGAcuGGC-CCCCGu -3'
miRNA:   3'- -GUUCGCCUGGgUUuUU--UUGuGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 107597 0.69 0.95476
Target:  5'- gAAGUGGACCCuaugccAGAAGACGCCa--- -3'
miRNA:   3'- gUUCGCCUGGGu-----UUUUUUGUGGgguu -5'
13253 3' -49.8 NC_003401.1 + 83870 0.69 0.962592
Target:  5'- --cGCGGAUgCAAAcGAACACCUCu- -3'
miRNA:   3'- guuCGCCUGgGUUUuUUUGUGGGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.