Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13255 | 5' | -61.4 | NC_003401.1 | + | 114185 | 1.06 | 0.001313 |
Target: 5'- aACACGGGAACGCGCGCUGACCGCCCUc -3' miRNA: 3'- -UGUGCCCUUGCGCGCGACUGGCGGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 27528 | 0.78 | 0.132386 |
Target: 5'- gACACGGGGGCcggcuGUGCGCUGGCCuccaccgggGCCCg -3' miRNA: 3'- -UGUGCCCUUG-----CGCGCGACUGG---------CGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 32505 | 0.76 | 0.169851 |
Target: 5'- gACACcuuGGGACGCGCGCc-ACCGCCCg -3' miRNA: 3'- -UGUGc--CCUUGCGCGCGacUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 84213 | 0.76 | 0.17408 |
Target: 5'- aGC-CGGGAAUGC-CGCUGcCCGCCCc -3' miRNA: 3'- -UGuGCCCUUGCGcGCGACuGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 20454 | 0.74 | 0.238081 |
Target: 5'- ---gGGGGAgGCGCcagcguaggGCUGGCCGCCCa -3' miRNA: 3'- ugugCCCUUgCGCG---------CGACUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 121167 | 0.74 | 0.249519 |
Target: 5'- gGCGCgGGGGGCGCGCcgguuGCUGcuGCCGCuCCUc -3' miRNA: 3'- -UGUG-CCCUUGCGCG-----CGAC--UGGCG-GGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 10900 | 0.71 | 0.381248 |
Target: 5'- cGCGCuucccuGGGAG-GCGCGCUG-CCGCUCg -3' miRNA: 3'- -UGUG------CCCUUgCGCGCGACuGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 20242 | 0.7 | 0.389345 |
Target: 5'- cCGCGGuGAcCGUgGUGCUGuCCGCCCUc -3' miRNA: 3'- uGUGCC-CUuGCG-CGCGACuGGCGGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 132438 | 0.7 | 0.397552 |
Target: 5'- cGCGCGGGcccggGGgGCGCGCggggGACCcucGCCCc -3' miRNA: 3'- -UGUGCCC-----UUgCGCGCGa---CUGG---CGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 53766 | 0.7 | 0.397552 |
Target: 5'- uCAgGGGGAgGCGC-CUGACgCGCCUg -3' miRNA: 3'- uGUgCCCUUgCGCGcGACUG-GCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 84360 | 0.69 | 0.46159 |
Target: 5'- aGCAUGGGGuCGUGCggacgcacgguggcgGCUgGACCGCCUUc -3' miRNA: 3'- -UGUGCCCUuGCGCG---------------CGA-CUGGCGGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 26564 | 0.69 | 0.46702 |
Target: 5'- cACGCGGG--UGCGCaUUGGcCCGCCCa -3' miRNA: 3'- -UGUGCCCuuGCGCGcGACU-GGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 123657 | 0.69 | 0.476143 |
Target: 5'- gACACGGGGgacACGCGCGCUcACauaGaCCUa -3' miRNA: 3'- -UGUGCCCU---UGCGCGCGAcUGg--CgGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 132712 | 0.69 | 0.483504 |
Target: 5'- gGCAuCGGGAGcCGCGCGCcgcggcuuguggGGCCccggGCCCg -3' miRNA: 3'- -UGU-GCCCUU-GCGCGCGa-----------CUGG----CGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 8870 | 0.69 | 0.485353 |
Target: 5'- uCGCGGG-GCGCgGCGUgGACCGCaaCCUg -3' miRNA: 3'- uGUGCCCuUGCG-CGCGaCUGGCG--GGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 16348 | 0.68 | 0.504023 |
Target: 5'- uGCAUGGGAggAgGC-CGCUGGCCaCCCc -3' miRNA: 3'- -UGUGCCCU--UgCGcGCGACUGGcGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 27088 | 0.68 | 0.504023 |
Target: 5'- aACACGGGAugGUGCaaGUacuCCGCCUg -3' miRNA: 3'- -UGUGCCCUugCGCG--CGacuGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 108859 | 0.68 | 0.520133 |
Target: 5'- gACGCGGGAcuucuggccucgcuGCGagaacugGCGCcGACCGUCCc -3' miRNA: 3'- -UGUGCCCU--------------UGCg------CGCGaCUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 17496 | 0.68 | 0.522997 |
Target: 5'- gACGCGGacGCgGCGCGCgUGGCC-CCCg -3' miRNA: 3'- -UGUGCCcuUG-CGCGCG-ACUGGcGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 112996 | 0.68 | 0.532587 |
Target: 5'- -gACGGGAACGCaCGUUaACUGCUCUc -3' miRNA: 3'- ugUGCCCUUGCGcGCGAcUGGCGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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