Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13255 | 5' | -61.4 | NC_003401.1 | + | 114185 | 1.06 | 0.001313 |
Target: 5'- aACACGGGAACGCGCGCUGACCGCCCUc -3' miRNA: 3'- -UGUGCCCUUGCGCGCGACUGGCGGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 16292 | 0.66 | 0.650903 |
Target: 5'- -gACGGaagaccugcGAACGCGUcucggucgcgaGgUGACCGCCCg -3' miRNA: 3'- ugUGCC---------CUUGCGCG-----------CgACUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 43163 | 0.66 | 0.640953 |
Target: 5'- uCACGGGAACGCcggcgaccaGCGC-GACgGaCCUg -3' miRNA: 3'- uGUGCCCUUGCG---------CGCGaCUGgCgGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 23576 | 0.66 | 0.640953 |
Target: 5'- aGCACGGGuuucgguaguGACGCGC-CUGgacgGCUGCCa- -3' miRNA: 3'- -UGUGCCC----------UUGCGCGcGAC----UGGCGGga -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 118840 | 0.66 | 0.630996 |
Target: 5'- -uGCGGaGAuccccCGUGCGCaucGCCGCCCUc -3' miRNA: 3'- ugUGCC-CUu----GCGCGCGac-UGGCGGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 71459 | 0.66 | 0.630996 |
Target: 5'- uGCACGGGGACG-GUcg-GugUGCCCa -3' miRNA: 3'- -UGUGCCCUUGCgCGcgaCugGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 101130 | 0.67 | 0.60116 |
Target: 5'- gACAC-GGAugGCGCGUUucuagaacaGAUCGCUCg -3' miRNA: 3'- -UGUGcCCUugCGCGCGA---------CUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 70558 | 0.67 | 0.591249 |
Target: 5'- aACAcCGGaGAGgGCGCGUguucuaaaaGACCGUCCg -3' miRNA: 3'- -UGU-GCC-CUUgCGCGCGa--------CUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 121933 | 0.67 | 0.571518 |
Target: 5'- gGCGCGGGuGCgGCG-GCUGGCgCGgCCg -3' miRNA: 3'- -UGUGCCCuUG-CGCgCGACUG-GCgGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 112996 | 0.68 | 0.532587 |
Target: 5'- -gACGGGAACGCaCGUUaACUGCUCUc -3' miRNA: 3'- ugUGCCCUUGCGcGCGAcUGGCGGGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 17496 | 0.68 | 0.522997 |
Target: 5'- gACGCGGacGCgGCGCGCgUGGCC-CCCg -3' miRNA: 3'- -UGUGCCcuUG-CGCGCG-ACUGGcGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 27528 | 0.78 | 0.132386 |
Target: 5'- gACACGGGGGCcggcuGUGCGCUGGCCuccaccgggGCCCg -3' miRNA: 3'- -UGUGCCCUUG-----CGCGCGACUGG---------CGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 20454 | 0.74 | 0.238081 |
Target: 5'- ---gGGGGAgGCGCcagcguaggGCUGGCCGCCCa -3' miRNA: 3'- ugugCCCUUgCGCG---------CGACUGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 121167 | 0.74 | 0.249519 |
Target: 5'- gGCGCgGGGGGCGCGCcgguuGCUGcuGCCGCuCCUc -3' miRNA: 3'- -UGUG-CCCUUGCGCG-----CGAC--UGGCG-GGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 10900 | 0.71 | 0.381248 |
Target: 5'- cGCGCuucccuGGGAG-GCGCGCUG-CCGCUCg -3' miRNA: 3'- -UGUG------CCCUUgCGCGCGACuGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 53766 | 0.7 | 0.397552 |
Target: 5'- uCAgGGGGAgGCGC-CUGACgCGCCUg -3' miRNA: 3'- uGUgCCCUUgCGCGcGACUG-GCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 26564 | 0.69 | 0.46702 |
Target: 5'- cACGCGGG--UGCGCaUUGGcCCGCCCa -3' miRNA: 3'- -UGUGCCCuuGCGCGcGACU-GGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 8870 | 0.69 | 0.485353 |
Target: 5'- uCGCGGG-GCGCgGCGUgGACCGCaaCCUg -3' miRNA: 3'- uGUGCCCuUGCG-CGCGaCUGGCG--GGA- -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 123531 | 0.66 | 0.660838 |
Target: 5'- aACACGGGGuccaggggccGCGC-CGCggccaaACCGCCUa -3' miRNA: 3'- -UGUGCCCU----------UGCGcGCGac----UGGCGGGa -5' |
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13255 | 5' | -61.4 | NC_003401.1 | + | 84213 | 0.76 | 0.17408 |
Target: 5'- aGC-CGGGAAUGC-CGCUGcCCGCCCc -3' miRNA: 3'- -UGuGCCCUUGCGcGCGACuGGCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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