miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13255 5' -61.4 NC_003401.1 + 8870 0.69 0.485353
Target:  5'- uCGCGGG-GCGCgGCGUgGACCGCaaCCUg -3'
miRNA:   3'- uGUGCCCuUGCG-CGCGaCUGGCG--GGA- -5'
13255 5' -61.4 NC_003401.1 + 10900 0.71 0.381248
Target:  5'- cGCGCuucccuGGGAG-GCGCGCUG-CCGCUCg -3'
miRNA:   3'- -UGUG------CCCUUgCGCGCGACuGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 12592 0.68 0.546116
Target:  5'- cCugGGGAAgguuuuccagagcguCaGCGCGCaGACCGCCg- -3'
miRNA:   3'- uGugCCCUU---------------G-CGCGCGaCUGGCGGga -5'
13255 5' -61.4 NC_003401.1 + 16253 0.66 0.625022
Target:  5'- aGCgACGGGucaucgcacgccgccAGgGUGCGCcgGAUCGCCCUu -3'
miRNA:   3'- -UG-UGCCC---------------UUgCGCGCGa-CUGGCGGGA- -5'
13255 5' -61.4 NC_003401.1 + 16292 0.66 0.650903
Target:  5'- -gACGGaagaccugcGAACGCGUcucggucgcgaGgUGACCGCCCg -3'
miRNA:   3'- ugUGCC---------CUUGCGCG-----------CgACUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 16348 0.68 0.504023
Target:  5'- uGCAUGGGAggAgGC-CGCUGGCCaCCCc -3'
miRNA:   3'- -UGUGCCCU--UgCGcGCGACUGGcGGGa -5'
13255 5' -61.4 NC_003401.1 + 17496 0.68 0.522997
Target:  5'- gACGCGGacGCgGCGCGCgUGGCC-CCCg -3'
miRNA:   3'- -UGUGCCcuUG-CGCGCG-ACUGGcGGGa -5'
13255 5' -61.4 NC_003401.1 + 20242 0.7 0.389345
Target:  5'- cCGCGGuGAcCGUgGUGCUGuCCGCCCUc -3'
miRNA:   3'- uGUGCC-CUuGCG-CGCGACuGGCGGGA- -5'
13255 5' -61.4 NC_003401.1 + 20454 0.74 0.238081
Target:  5'- ---gGGGGAgGCGCcagcguaggGCUGGCCGCCCa -3'
miRNA:   3'- ugugCCCUUgCGCG---------CGACUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 23576 0.66 0.640953
Target:  5'- aGCACGGGuuucgguaguGACGCGC-CUGgacgGCUGCCa- -3'
miRNA:   3'- -UGUGCCC----------UUGCGCGcGAC----UGGCGGga -5'
13255 5' -61.4 NC_003401.1 + 26564 0.69 0.46702
Target:  5'- cACGCGGG--UGCGCaUUGGcCCGCCCa -3'
miRNA:   3'- -UGUGCCCuuGCGCGcGACU-GGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 27088 0.68 0.504023
Target:  5'- aACACGGGAugGUGCaaGUacuCCGCCUg -3'
miRNA:   3'- -UGUGCCCUugCGCG--CGacuGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 27528 0.78 0.132386
Target:  5'- gACACGGGGGCcggcuGUGCGCUGGCCuccaccgggGCCCg -3'
miRNA:   3'- -UGUGCCCUUG-----CGCGCGACUGG---------CGGGa -5'
13255 5' -61.4 NC_003401.1 + 32505 0.76 0.169851
Target:  5'- gACACcuuGGGACGCGCGCc-ACCGCCCg -3'
miRNA:   3'- -UGUGc--CCUUGCGCGCGacUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 43163 0.66 0.640953
Target:  5'- uCACGGGAACGCcggcgaccaGCGC-GACgGaCCUg -3'
miRNA:   3'- uGUGCCCUUGCG---------CGCGaCUGgCgGGA- -5'
13255 5' -61.4 NC_003401.1 + 53766 0.7 0.397552
Target:  5'- uCAgGGGGAgGCGC-CUGACgCGCCUg -3'
miRNA:   3'- uGUgCCCUUgCGCGcGACUG-GCGGGa -5'
13255 5' -61.4 NC_003401.1 + 70558 0.67 0.591249
Target:  5'- aACAcCGGaGAGgGCGCGUguucuaaaaGACCGUCCg -3'
miRNA:   3'- -UGU-GCC-CUUgCGCGCGa--------CUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 71459 0.66 0.630996
Target:  5'- uGCACGGGGACG-GUcg-GugUGCCCa -3'
miRNA:   3'- -UGUGCCCUUGCgCGcgaCugGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 71972 0.66 0.630996
Target:  5'- cGCGUGGGGGCGCGCGUUccaGGgUGUCCc -3'
miRNA:   3'- -UGUGCCCUUGCGCGCGA---CUgGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 84213 0.76 0.17408
Target:  5'- aGC-CGGGAAUGC-CGCUGcCCGCCCc -3'
miRNA:   3'- -UGuGCCCUUGCGcGCGACuGGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.