miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13260 3' -54.2 NC_003401.1 + 116694 1.11 0.002983
Target:  5'- gGGAUUCCCCAAACCCGAGACCCACUGa -3'
miRNA:   3'- -CCUAAGGGGUUUGGGCUCUGGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 118288 0.8 0.27578
Target:  5'- ----cUCCCGAGCCCGGGGCCCGCg- -3'
miRNA:   3'- ccuaaGGGGUUUGGGCUCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 132532 0.77 0.432886
Target:  5'- ----cCCCCGGGCCCGGGGcCCCACa- -3'
miRNA:   3'- ccuaaGGGGUUUGGGCUCU-GGGUGac -5'
13260 3' -54.2 NC_003401.1 + 17674 0.73 0.631035
Target:  5'- aGGAgUCCagcaCGAACCCGGGGgCCACg- -3'
miRNA:   3'- -CCUaAGGg---GUUUGGGCUCUgGGUGac -5'
13260 3' -54.2 NC_003401.1 + 28949 0.71 0.743277
Target:  5'- ----aCCCCAuGCCuCGGGACCC-CUGu -3'
miRNA:   3'- ccuaaGGGGUuUGG-GCUCUGGGuGAC- -5'
13260 3' -54.2 NC_003401.1 + 25490 0.71 0.753071
Target:  5'- uGGGUUCCCCGAGgguCCCGGGcucCCCGu-- -3'
miRNA:   3'- -CCUAAGGGGUUU---GGGCUCu--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25933 0.7 0.791058
Target:  5'- cGGGcUCCCCGuuCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuuGGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 31256 0.7 0.809206
Target:  5'- ----cCCCCGgaGACCCGGGAUUCACg- -3'
miRNA:   3'- ccuaaGGGGU--UUGGGCUCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 132343 0.69 0.835169
Target:  5'- ----gCCCCGccGGCCCG-GGCCCGCg- -3'
miRNA:   3'- ccuaaGGGGU--UUGGGCuCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 86317 0.69 0.835169
Target:  5'- -uGUUCCCgAAGCaCCGAcACCCGCUc -3'
miRNA:   3'- ccUAAGGGgUUUG-GGCUcUGGGUGAc -5'
13260 3' -54.2 NC_003401.1 + 132873 0.69 0.843454
Target:  5'- cGAUcCCCCGuucuCCCGGGGCCCuCg- -3'
miRNA:   3'- cCUAaGGGGUuu--GGGCUCUGGGuGac -5'
13260 3' -54.2 NC_003401.1 + 132274 0.69 0.851542
Target:  5'- aGGGUcCCCCGcgcGCCCcccGGGCCCGCg- -3'
miRNA:   3'- -CCUAaGGGGUu--UGGGc--UCUGGGUGac -5'
13260 3' -54.2 NC_003401.1 + 115427 0.69 0.851542
Target:  5'- cGGAgccaCCCCGGAgCCGAGccgcuCCCACc- -3'
miRNA:   3'- -CCUaa--GGGGUUUgGGCUCu----GGGUGac -5'
13260 3' -54.2 NC_003401.1 + 106822 0.69 0.85234
Target:  5'- aGAUUCCCUuugguucggugaccuGGCCgGAGGCUgGCUGg -3'
miRNA:   3'- cCUAAGGGGu--------------UUGGgCUCUGGgUGAC- -5'
13260 3' -54.2 NC_003401.1 + 81074 0.69 0.859426
Target:  5'- ---gUCCCCGAACCCugGAGACgaaCCACc- -3'
miRNA:   3'- ccuaAGGGGUUUGGG--CUCUG---GGUGac -5'
13260 3' -54.2 NC_003401.1 + 115778 0.68 0.867098
Target:  5'- cGGAgccaCCCCGGAgCCGAGccccCCCACc- -3'
miRNA:   3'- -CCUaa--GGGGUUUgGGCUCu---GGGUGac -5'
13260 3' -54.2 NC_003401.1 + 53192 0.68 0.874554
Target:  5'- cGGAcgcUUCCuCCGAAUCCGcccACCCAUUGu -3'
miRNA:   3'- -CCU---AAGG-GGUUUGGGCuc-UGGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 116889 0.68 0.874554
Target:  5'- gGGAggaCCC-AGCCUGcAGuCCCACUGa -3'
miRNA:   3'- -CCUaagGGGuUUGGGC-UCuGGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 43729 0.68 0.874554
Target:  5'- aGGUUCCCCAGACCC-AG-CgCCugUa -3'
miRNA:   3'- cCUAAGGGGUUUGGGcUCuG-GGugAc -5'
13260 3' -54.2 NC_003401.1 + 117937 0.68 0.881786
Target:  5'- -----gCCCAAAUCUGGGGCCCAUg- -3'
miRNA:   3'- ccuaagGGGUUUGGGCUCUGGGUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.