miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13262 5' -56.7 NC_003401.1 + 58105 0.66 0.887614
Target:  5'- aGGCgGGUGGGAAgu-UUCCUGUaCGGg -3'
miRNA:   3'- gCCGgUUACCCUUugcAGGGACG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 132407 0.66 0.887614
Target:  5'- uCGGuUCGcgGGGccGGGgGUCCCgcgggggGCCGGg -3'
miRNA:   3'- -GCC-GGUuaCCC--UUUgCAGGGa------CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 107800 0.66 0.880715
Target:  5'- aGGCuCGAUGGGccccGCG-CCCggugGCgCGGa -3'
miRNA:   3'- gCCG-GUUACCCuu--UGCaGGGa---CG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 92305 0.66 0.880715
Target:  5'- aGGCCGGgacgGGGAAucgccUGUUCCUuaCGGu -3'
miRNA:   3'- gCCGGUUa---CCCUUu----GCAGGGAcgGCC- -5'
13262 5' -56.7 NC_003401.1 + 120786 0.66 0.87647
Target:  5'- uGGCCuggaAGUGGGggGCGgaugggugaugucguUCCCa-CCGGc -3'
miRNA:   3'- gCCGG----UUACCCuuUGC---------------AGGGacGGCC- -5'
13262 5' -56.7 NC_003401.1 + 75179 0.66 0.858729
Target:  5'- aGGUCAAUGGu--GCGUCaCCUGUUaGGa -3'
miRNA:   3'- gCCGGUUACCcuuUGCAG-GGACGG-CC- -5'
13262 5' -56.7 NC_003401.1 + 121438 0.66 0.858729
Target:  5'- uGGCgAuUGGG-GugGUCCCggugaGUCGGg -3'
miRNA:   3'- gCCGgUuACCCuUugCAGGGa----CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 68888 0.66 0.858729
Target:  5'- uGGCCAAcGGGAagAugGUUCCUGaCa- -3'
miRNA:   3'- gCCGGUUaCCCU--UugCAGGGACgGcc -5'
13262 5' -56.7 NC_003401.1 + 88224 0.66 0.858729
Target:  5'- uCGGUauAUGGGucACGUuccagccuUCCUGCUGGg -3'
miRNA:   3'- -GCCGguUACCCuuUGCA--------GGGACGGCC- -5'
13262 5' -56.7 NC_003401.1 + 107268 0.67 0.850989
Target:  5'- cCGGCCGuccguucUGGGGAGCGUgUauugaaUGCgCGGg -3'
miRNA:   3'- -GCCGGUu------ACCCUUUGCAgGg-----ACG-GCC- -5'
13262 5' -56.7 NC_003401.1 + 120013 0.67 0.843053
Target:  5'- cCGGCCAccGGcGGucugccccCGUCCCUGgUGGc -3'
miRNA:   3'- -GCCGGUuaCC-CUuu------GCAGGGACgGCC- -5'
13262 5' -56.7 NC_003401.1 + 10843 0.67 0.843053
Target:  5'- -cGCCuacGGcGAGGCGUCCgaGCUGGu -3'
miRNA:   3'- gcCGGuuaCC-CUUUGCAGGgaCGGCC- -5'
13262 5' -56.7 NC_003401.1 + 98994 0.67 0.834928
Target:  5'- gGGCCAgcgagcgucugAUaGGGGcuaggucucuGGCGUCCuCUGCCGc -3'
miRNA:   3'- gCCGGU-----------UA-CCCU----------UUGCAGG-GACGGCc -5'
13262 5' -56.7 NC_003401.1 + 117819 0.67 0.826621
Target:  5'- gGGCCGccGGcaGGGACGuuUCCCauugGCCGGc -3'
miRNA:   3'- gCCGGUuaCC--CUUUGC--AGGGa---CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 94719 0.67 0.825781
Target:  5'- gCGGCCAggaggaacgaucaAUGGGcauuGGCGUCCaaggacugGCCGa -3'
miRNA:   3'- -GCCGGU-------------UACCCu---UUGCAGGga------CGGCc -5'
13262 5' -56.7 NC_003401.1 + 79949 0.67 0.81814
Target:  5'- gGGCgCGGUugcguugcccGGGGAACacgCCCUGCCGc -3'
miRNA:   3'- gCCG-GUUA----------CCCUUUGca-GGGACGGCc -5'
13262 5' -56.7 NC_003401.1 + 89124 0.67 0.81814
Target:  5'- -aGCUGcUGGGugcCGUCCCUGCCa- -3'
miRNA:   3'- gcCGGUuACCCuuuGCAGGGACGGcc -5'
13262 5' -56.7 NC_003401.1 + 91593 0.67 0.817283
Target:  5'- cCGcGCCAugggcacguacacGUcGGAGGCGUCCCUcGCCuGGc -3'
miRNA:   3'- -GC-CGGU-------------UAcCCUUUGCAGGGA-CGG-CC- -5'
13262 5' -56.7 NC_003401.1 + 132639 0.68 0.754567
Target:  5'- uCGGCCGGaccGGGgcGC-UCCCgggagucgGCCGGg -3'
miRNA:   3'- -GCCGGUUa--CCCuuUGcAGGGa-------CGGCC- -5'
13262 5' -56.7 NC_003401.1 + 51558 0.69 0.748831
Target:  5'- -cGCCGGUGGGGGucuugaaacugaacCGUCCCcGCCGu -3'
miRNA:   3'- gcCGGUUACCCUUu-------------GCAGGGaCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.