miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13263 3' -60 NC_003401.1 + 42294 0.7 0.485354
Target:  5'- -gCGGGUGGagcguGGCCGCCaCCAgGGg -3'
miRNA:   3'- ggGCCCGCCguuu-UCGGCGG-GGUaCC- -5'
13263 3' -60 NC_003401.1 + 63394 0.7 0.494648
Target:  5'- gCCCGGGCccucugGGuUAGAAGuagccCCGCCCCccGUGGu -3'
miRNA:   3'- -GGGCCCG------CC-GUUUUC-----GGCGGGG--UACC- -5'
13263 3' -60 NC_003401.1 + 132673 0.7 0.504023
Target:  5'- gCCCGGGgGGCGucGGGGCgcggCGCCgCcgGGc -3'
miRNA:   3'- -GGGCCCgCCGU--UUUCG----GCGGgGuaCC- -5'
13263 3' -60 NC_003401.1 + 117766 0.69 0.532587
Target:  5'- aCCCGcGGCGGCcauGGUCGCCgCGg-- -3'
miRNA:   3'- -GGGC-CCGCCGuuuUCGGCGGgGUacc -5'
13263 3' -60 NC_003401.1 + 132512 0.69 0.56171
Target:  5'- gCCGGG-GGCGGcGGCCGCgggCCCG-GGc -3'
miRNA:   3'- gGGCCCgCCGUUuUCGGCG---GGGUaCC- -5'
13263 3' -60 NC_003401.1 + 86567 0.69 0.571518
Target:  5'- gCCUGGaGCGGCugcGAAGGCCGCagCUCAUa- -3'
miRNA:   3'- -GGGCC-CGCCG---UUUUCGGCG--GGGUAcc -5'
13263 3' -60 NC_003401.1 + 47838 0.69 0.571518
Target:  5'- aCCCGGGCcGCGGGgacGGuCCGUCcgggCCGUGGu -3'
miRNA:   3'- -GGGCCCGcCGUUU---UC-GGCGG----GGUACC- -5'
13263 3' -60 NC_003401.1 + 15566 0.69 0.581367
Target:  5'- gUCCGGGCGGCAGGgcuaaggugggcAGCUauuGCgUgAUGGa -3'
miRNA:   3'- -GGGCCCGCCGUUU------------UCGG---CGgGgUACC- -5'
13263 3' -60 NC_003401.1 + 11765 0.68 0.591249
Target:  5'- gCCCGGcguuggcuucGCGGUGGuGGUCGCgCCCuUGGg -3'
miRNA:   3'- -GGGCC----------CGCCGUUuUCGGCG-GGGuACC- -5'
13263 3' -60 NC_003401.1 + 17691 0.68 0.591249
Target:  5'- aCCUGcGCGacCGAAAGCCuGCCCgGUGGa -3'
miRNA:   3'- -GGGCcCGCc-GUUUUCGG-CGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 128522 0.68 0.60116
Target:  5'- cCCCGGGCaccuu-GGCCGCCCUGacacuUGGc -3'
miRNA:   3'- -GGGCCCGccguuuUCGGCGGGGU-----ACC- -5'
13263 3' -60 NC_003401.1 + 64372 0.68 0.621041
Target:  5'- gCCCGGGUa-CGGAGGCC-CCCCAg-- -3'
miRNA:   3'- -GGGCCCGccGUUUUCGGcGGGGUacc -5'
13263 3' -60 NC_003401.1 + 128155 0.68 0.621041
Target:  5'- gCCCGGG-GGCGAAAucagauCgGCCCUguGUGGa -3'
miRNA:   3'- -GGGCCCgCCGUUUUc-----GgCGGGG--UACC- -5'
13263 3' -60 NC_003401.1 + 22813 0.68 0.621041
Target:  5'- gCCCGGGCcGCGgguauuaauGGAcGCCGUCaaCCGUGGc -3'
miRNA:   3'- -GGGCCCGcCGU---------UUU-CGGCGG--GGUACC- -5'
13263 3' -60 NC_003401.1 + 91722 0.68 0.630996
Target:  5'- gCCCGGGaCGGCAuuauuCCGgUCCGUcGGa -3'
miRNA:   3'- -GGGCCC-GCCGUuuuc-GGCgGGGUA-CC- -5'
13263 3' -60 NC_003401.1 + 115738 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115706 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115674 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115642 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115769 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.