miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13263 3' -60 NC_003401.1 + 118121 1.12 0.000724
Target:  5'- cCCCGGGCGGCAAAAGCCGCCCCAUGGg -3'
miRNA:   3'- -GGGCCCGCCGUUUUCGGCGGGGUACC- -5'
13263 3' -60 NC_003401.1 + 132428 0.85 0.0611
Target:  5'- cCCgCGGGgGGCcGGGGCCGCCCCcgGGu -3'
miRNA:   3'- -GG-GCCCgCCGuUUUCGGCGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 132577 0.81 0.108063
Target:  5'- gCCGGGCGGCc---GCCGCCCggCAUGGc -3'
miRNA:   3'- gGGCCCGCCGuuuuCGGCGGG--GUACC- -5'
13263 3' -60 NC_003401.1 + 132352 0.77 0.20147
Target:  5'- gCCCGGGCccGCGGccGCCGCCCCcgGc -3'
miRNA:   3'- -GGGCCCGc-CGUUuuCGGCGGGGuaCc -5'
13263 3' -60 NC_003401.1 + 64232 0.76 0.227085
Target:  5'- aCCCGGGCGGUAccGGCaaCCCCGUacGGg -3'
miRNA:   3'- -GGGCCCGCCGUuuUCGgcGGGGUA--CC- -5'
13263 3' -60 NC_003401.1 + 104940 0.75 0.255406
Target:  5'- gCCGcGG-GGCAGAGGCCGCaaCGUGGa -3'
miRNA:   3'- gGGC-CCgCCGUUUUCGGCGggGUACC- -5'
13263 3' -60 NC_003401.1 + 107899 0.75 0.261406
Target:  5'- gUCCGGGUccGGCuc-GGCCGCCCCGa-- -3'
miRNA:   3'- -GGGCCCG--CCGuuuUCGGCGGGGUacc -5'
13263 3' -60 NC_003401.1 + 133696 0.75 0.267521
Target:  5'- gUCCGGGCGGgGgaGAGGCCcggGUCCCGUGu -3'
miRNA:   3'- -GGGCCCGCCgU--UUUCGG---CGGGGUACc -5'
13263 3' -60 NC_003401.1 + 84179 0.74 0.293137
Target:  5'- aCCCGGaaGGCGGuccAGCCGCCaCCGUGc -3'
miRNA:   3'- -GGGCCcgCCGUUu--UCGGCGG-GGUACc -5'
13263 3' -60 NC_003401.1 + 118282 0.73 0.327797
Target:  5'- gCCCaugGGGCGGCuuuuGCCGCCCg--GGg -3'
miRNA:   3'- -GGG---CCCGCCGuuuuCGGCGGGguaCC- -5'
13263 3' -60 NC_003401.1 + 27657 0.73 0.350006
Target:  5'- uCuuGGGCGGCGGGGGCUggaguugccgGCUgCGUGGc -3'
miRNA:   3'- -GggCCCGCCGUUUUCGG----------CGGgGUACC- -5'
13263 3' -60 NC_003401.1 + 8826 0.73 0.357644
Target:  5'- aCCGGuGUGGCGAuuGCCGCggagCCCAgcacgUGGg -3'
miRNA:   3'- gGGCC-CGCCGUUuuCGGCG----GGGU-----ACC- -5'
13263 3' -60 NC_003401.1 + 132604 0.73 0.357644
Target:  5'- gCCCGGcggaGCGGCAcccgGGGGCgGCCCCGg-- -3'
miRNA:   3'- -GGGCC----CGCCGU----UUUCGgCGGGGUacc -5'
13263 3' -60 NC_003401.1 + 94486 0.72 0.389345
Target:  5'- aCgUGGGaCGGCGuuAAGCCGUCCCAcccucccuUGGa -3'
miRNA:   3'- -GgGCCC-GCCGUu-UUCGGCGGGGU--------ACC- -5'
13263 3' -60 NC_003401.1 + 118116 0.72 0.397553
Target:  5'- aUgGGGaCGGUggGGGCCGCgcgccaCCAUGGg -3'
miRNA:   3'- gGgCCC-GCCGuuUUCGGCGg-----GGUACC- -5'
13263 3' -60 NC_003401.1 + 32343 0.72 0.397553
Target:  5'- gCCGGGCGGUGGc-GCgCGUCCCAaGGu -3'
miRNA:   3'- gGGCCCGCCGUUuuCG-GCGGGGUaCC- -5'
13263 3' -60 NC_003401.1 + 62727 0.71 0.422831
Target:  5'- cCCgCGGGUGGCGGGGGaCUGCacaCGUGGu -3'
miRNA:   3'- -GG-GCCCGCCGUUUUC-GGCGgg-GUACC- -5'
13263 3' -60 NC_003401.1 + 132431 0.7 0.476143
Target:  5'- gCCCGGGgGGCGcgcGGGGgacccUCGCCCCG-GGc -3'
miRNA:   3'- -GGGCCCgCCGU---UUUC-----GGCGGGGUaCC- -5'
13263 3' -60 NC_003401.1 + 132379 0.7 0.476143
Target:  5'- gCCCGgcGGCGGCGccGGCCgggcGCCUCcgGGc -3'
miRNA:   3'- -GGGC--CCGCCGUuuUCGG----CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 123371 0.7 0.476143
Target:  5'- gCUCGGGCGGCAc--GCCGgUCCAg-- -3'
miRNA:   3'- -GGGCCCGCCGUuuuCGGCgGGGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.