miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13263 3' -60 NC_003401.1 + 64865 0.66 0.729327
Target:  5'- gUCCGGGCaacGCuAAAGGCUaGUCCgGUGGc -3'
miRNA:   3'- -GGGCCCGc--CG-UUUUCGG-CGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 96689 0.66 0.729327
Target:  5'- gUCUGGGgGGCAGAGuCCGCgUCCAUc- -3'
miRNA:   3'- -GGGCCCgCCGUUUUcGGCG-GGGUAcc -5'
13263 3' -60 NC_003401.1 + 17206 0.66 0.718749
Target:  5'- gCUCGaGCGGCGAggagcgaccaacgGAGaCCGCCaCCAUGc -3'
miRNA:   3'- -GGGCcCGCCGUU-------------UUC-GGCGG-GGUACc -5'
13263 3' -60 NC_003401.1 + 132507 0.66 0.719714
Target:  5'- gCCC-GGCGGCGccgcGCCccgacGCCCCccGGg -3'
miRNA:   3'- -GGGcCCGCCGUuuu-CGG-----CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 16864 0.66 0.747365
Target:  5'- aCCUGGcgguguaccaaaaGCuGGCGAgcaggugcgagGAGCUGCCCCA-GGu -3'
miRNA:   3'- -GGGCC-------------CG-CCGUU-----------UUCGGCGGGGUaCC- -5'
13263 3' -60 NC_003401.1 + 17850 0.66 0.71003
Target:  5'- aCCGGGCaGGCuuucGGUCGCgCagGUGGg -3'
miRNA:   3'- gGGCCCG-CCGuuu-UCGGCGgGg-UACC- -5'
13263 3' -60 NC_003401.1 + 16185 0.66 0.73886
Target:  5'- aCCgGGGUGGcCAGcGGCCuccUCCCAUGc -3'
miRNA:   3'- -GGgCCCGCC-GUUuUCGGc--GGGGUACc -5'
13263 3' -60 NC_003401.1 + 116421 0.66 0.757653
Target:  5'- aCCCGGaGCcaccccGGagccGAGCCGCCCCcacccGGa -3'
miRNA:   3'- -GGGCC-CG------CCguu-UUCGGCGGGGua---CC- -5'
13263 3' -60 NC_003401.1 + 23590 0.66 0.73886
Target:  5'- aCCCGGcGCGGCGGggauuuuuccGGGUCGUUCgGaGGg -3'
miRNA:   3'- -GGGCC-CGCCGUU----------UUCGGCGGGgUaCC- -5'
13263 3' -60 NC_003401.1 + 116101 0.66 0.757653
Target:  5'- aCCCGGaGCcaccccGGagccGAGCCGCCCCcacccGGa -3'
miRNA:   3'- -GGGCC-CG------CCguu-UUCGGCGGGGua---CC- -5'
13263 3' -60 NC_003401.1 + 116229 0.66 0.757653
Target:  5'- aCCCGGaGCcaccccGGagccGAGCCGCCCCcacccGGa -3'
miRNA:   3'- -GGGCC-CG------CCguu-UUCGGCGGGGua---CC- -5'
13263 3' -60 NC_003401.1 + 69749 0.66 0.719714
Target:  5'- --aGGGCGGa--GAGCCGgCCgCCAUGcGg -3'
miRNA:   3'- gggCCCGCCguuUUCGGC-GG-GGUAC-C- -5'
13263 3' -60 NC_003401.1 + 116165 0.66 0.757653
Target:  5'- aCCCGGaGCcaccccGGagccGAGCCGCCCCcacccGGa -3'
miRNA:   3'- -GGGCC-CG------CCguu-UUCGGCGGGGua---CC- -5'
13263 3' -60 NC_003401.1 + 116357 0.66 0.757653
Target:  5'- aCCCGGaGCcaccccGGagccGAGCCGCCCCcacccGGa -3'
miRNA:   3'- -GGGCC-CG------CCguu-UUCGGCGGGGua---CC- -5'
13263 3' -60 NC_003401.1 + 132834 0.66 0.729327
Target:  5'- gCCGGGCcccGCcGAGG-CGCCCCG-GGc -3'
miRNA:   3'- gGGCCCGc--CGuUUUCgGCGGGGUaCC- -5'
13263 3' -60 NC_003401.1 + 77858 0.66 0.719714
Target:  5'- --gGGGCGGUAAGGGaaagGCCCCGUu- -3'
miRNA:   3'- gggCCCGCCGUUUUCgg--CGGGGUAcc -5'
13263 3' -60 NC_003401.1 + 82640 0.66 0.757653
Target:  5'- gCgCGGGuUGGCGuuuuGGGCCGaCCCCuccGGc -3'
miRNA:   3'- -GgGCCC-GCCGUu---UUCGGC-GGGGua-CC- -5'
13263 3' -60 NC_003401.1 + 26565 0.66 0.757653
Target:  5'- aCgCGGGUGcGCAuuGGCC-CgCCCAUGc -3'
miRNA:   3'- -GgGCCCGC-CGUuuUCGGcG-GGGUACc -5'
13263 3' -60 NC_003401.1 + 116293 0.66 0.757653
Target:  5'- aCCCGGaGCcaccccGGagccGAGCCGCCCCcacccGGa -3'
miRNA:   3'- -GGGCC-CG------CCguu-UUCGGCGGGGua---CC- -5'
13263 3' -60 NC_003401.1 + 122121 0.66 0.748305
Target:  5'- gCCGGgaggcGCGGCAGGgggcguggcacGGCCGCgCCAg-- -3'
miRNA:   3'- gGGCC-----CGCCGUUU-----------UCGGCGgGGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.