miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13263 3' -60 NC_003401.1 + 115450 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 15566 0.69 0.581367
Target:  5'- gUCCGGGCGGCAGGgcuaaggugggcAGCUauuGCgUgAUGGa -3'
miRNA:   3'- -GGGCCCGCCGUUU------------UCGG---CGgGgUACC- -5'
13263 3' -60 NC_003401.1 + 17691 0.68 0.591249
Target:  5'- aCCUGcGCGacCGAAAGCCuGCCCgGUGGa -3'
miRNA:   3'- -GGGCcCGCc-GUUUUCGG-CGGGgUACC- -5'
13263 3' -60 NC_003401.1 + 91722 0.68 0.630996
Target:  5'- gCCCGGGaCGGCAuuauuCCGgUCCGUcGGa -3'
miRNA:   3'- -GGGCCC-GCCGUuuuc-GGCgGGGUA-CC- -5'
13263 3' -60 NC_003401.1 + 115290 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115322 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115354 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115386 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 115418 0.68 0.640953
Target:  5'- cUCCGGGUGGgGGcGGCUcgGCUCCggGGu -3'
miRNA:   3'- -GGGCCCGCCgUUuUCGG--CGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 47838 0.69 0.571518
Target:  5'- aCCCGGGCcGCGGGgacGGuCCGUCcgggCCGUGGu -3'
miRNA:   3'- -GGGCCCGcCGUUU---UC-GGCGG----GGUACC- -5'
13263 3' -60 NC_003401.1 + 86567 0.69 0.571518
Target:  5'- gCCUGGaGCGGCugcGAAGGCCGCagCUCAUa- -3'
miRNA:   3'- -GGGCC-CGCCG---UUUUCGGCG--GGGUAcc -5'
13263 3' -60 NC_003401.1 + 63394 0.7 0.494648
Target:  5'- gCCCGGGCccucugGGuUAGAAGuagccCCGCCCCccGUGGu -3'
miRNA:   3'- -GGGCCCG------CC-GUUUUC-----GGCGGGG--UACC- -5'
13263 3' -60 NC_003401.1 + 132428 0.85 0.0611
Target:  5'- cCCgCGGGgGGCcGGGGCCGCCCCcgGGu -3'
miRNA:   3'- -GG-GCCCgCCGuUUUCGGCGGGGuaCC- -5'
13263 3' -60 NC_003401.1 + 132577 0.81 0.108063
Target:  5'- gCCGGGCGGCc---GCCGCCCggCAUGGc -3'
miRNA:   3'- gGGCCCGCCGuuuuCGGCGGG--GUACC- -5'
13263 3' -60 NC_003401.1 + 132352 0.77 0.20147
Target:  5'- gCCCGGGCccGCGGccGCCGCCCCcgGc -3'
miRNA:   3'- -GGGCCCGc-CGUUuuCGGCGGGGuaCc -5'
13263 3' -60 NC_003401.1 + 64232 0.76 0.227085
Target:  5'- aCCCGGGCGGUAccGGCaaCCCCGUacGGg -3'
miRNA:   3'- -GGGCCCGCCGUuuUCGgcGGGGUA--CC- -5'
13263 3' -60 NC_003401.1 + 104940 0.75 0.255406
Target:  5'- gCCGcGG-GGCAGAGGCCGCaaCGUGGa -3'
miRNA:   3'- gGGC-CCgCCGUUUUCGGCGggGUACC- -5'
13263 3' -60 NC_003401.1 + 84179 0.74 0.293137
Target:  5'- aCCCGGaaGGCGGuccAGCCGCCaCCGUGc -3'
miRNA:   3'- -GGGCCcgCCGUUu--UCGGCGG-GGUACc -5'
13263 3' -60 NC_003401.1 + 27657 0.73 0.350006
Target:  5'- uCuuGGGCGGCGGGGGCUggaguugccgGCUgCGUGGc -3'
miRNA:   3'- -GggCCCGCCGUUUUCGG----------CGGgGUACC- -5'
13263 3' -60 NC_003401.1 + 32343 0.72 0.397553
Target:  5'- gCCGGGCGGUGGc-GCgCGUCCCAaGGu -3'
miRNA:   3'- gGGCCCGCCGUUuuCG-GCGGGGUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.