Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 118446 | 1.12 | 0.001012 |
Target: 5'- gCCGGCCGGCCAAAGGUGCGAUCGCGGg -3' miRNA: 3'- -GGCCGGCCGGUUUCCACGCUAGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 132533 | 0.78 | 0.217154 |
Target: 5'- cCCGGCgcgcggcgcggggCGGCCGGGGGcgGCGGcCGCGGg -3' miRNA: 3'- -GGCCG-------------GCCGGUUUCCa-CGCUaGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 89816 | 0.76 | 0.294553 |
Target: 5'- uCCGGCgGaGCUGAcGGUGCGG-CGCGGu -3' miRNA: 3'- -GGCCGgC-CGGUUuCCACGCUaGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 106719 | 0.75 | 0.30127 |
Target: 5'- uCCGGUgaagaugaGGCCuGAGGUGCGGUUGaCGGu -3' miRNA: 3'- -GGCCGg-------CCGGuUUCCACGCUAGC-GCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 118588 | 0.74 | 0.386129 |
Target: 5'- gCCGGCCGGCCucugcccggccaccGAGGaUGCGGUCaaUGGg -3' miRNA: 3'- -GGCCGGCCGGu-------------UUCC-ACGCUAGc-GCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 72638 | 0.73 | 0.39101 |
Target: 5'- gCGGCCacGGCCAAGGccGUGAcgCGCGGg -3' miRNA: 3'- gGCCGG--CCGGUUUCcaCGCUa-GCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 119076 | 0.71 | 0.496478 |
Target: 5'- gCGGCCGGCacCGGcguuaaccGGGUGCGuUgGCGGc -3' miRNA: 3'- gGCCGGCCG--GUU--------UCCACGCuAgCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 121029 | 0.71 | 0.534446 |
Target: 5'- aCgGGcCCGGCCGAGGGggGuCGAUCcUGGg -3' miRNA: 3'- -GgCC-GGCCGGUUUCCa-C-GCUAGcGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 118724 | 0.7 | 0.544103 |
Target: 5'- aCCGGCCGcGCCGcuug-GCGG-CGCGGc -3' miRNA: 3'- -GGCCGGC-CGGUuuccaCGCUaGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 49269 | 0.7 | 0.553816 |
Target: 5'- aCCGGCgGGUCAAAaacGGcagaaUGCGcagugGUCGCGGu -3' miRNA: 3'- -GGCCGgCCGGUUU---CC-----ACGC-----UAGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 46422 | 0.7 | 0.56358 |
Target: 5'- uCCGGCacCGGCauc-GGUGCGGUgauUGCGGu -3' miRNA: 3'- -GGCCG--GCCGguuuCCACGCUA---GCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 119780 | 0.7 | 0.57339 |
Target: 5'- aCGGCCuccgccaaucuGGCCGGAGGcgGCGca-GCGGc -3' miRNA: 3'- gGCCGG-----------CCGGUUUCCa-CGCuagCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 13674 | 0.7 | 0.583238 |
Target: 5'- cUCGGacaGGUCGcGGGccagGCGGUCGCGGu -3' miRNA: 3'- -GGCCgg-CCGGUuUCCa---CGCUAGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 118683 | 0.7 | 0.59312 |
Target: 5'- cCCGGUgGGCCAGGGGgccaGgGAcCGCaGGc -3' miRNA: 3'- -GGCCGgCCGGUUUCCa---CgCUaGCG-CC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 69476 | 0.69 | 0.622901 |
Target: 5'- aCGuGCCGGCaacuGGGGaacaUGCGAUaUGCGGg -3' miRNA: 3'- gGC-CGGCCGgu--UUCC----ACGCUA-GCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 106898 | 0.69 | 0.6428 |
Target: 5'- uCUGGuuGGCgAGAGGcuacgccgGCGuUUGCGGg -3' miRNA: 3'- -GGCCggCCGgUUUCCa-------CGCuAGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 72116 | 0.69 | 0.652741 |
Target: 5'- -aGGgCGGCCAGGGGUacgauaGCuGGUCGUGa -3' miRNA: 3'- ggCCgGCCGGUUUCCA------CG-CUAGCGCc -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 42183 | 0.68 | 0.662667 |
Target: 5'- gCCuGCCGGcCCAgcGcGUGcCGGUCGCGu -3' miRNA: 3'- -GGcCGGCC-GGUuuC-CAC-GCUAGCGCc -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 16652 | 0.68 | 0.662667 |
Target: 5'- uCCGGa-GGUCAAGGcUGCGG-CGCGGc -3' miRNA: 3'- -GGCCggCCGGUUUCcACGCUaGCGCC- -5' |
|||||||
13265 | 5' | -58.9 | NC_003401.1 | + | 27890 | 0.68 | 0.672569 |
Target: 5'- gUCGGCguccugUGcGCCGGAGGUcuGCGA-CGCGGc -3' miRNA: 3'- -GGCCG------GC-CGGUUUCCA--CGCUaGCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home