miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13265 5' -58.9 NC_003401.1 + 118446 1.12 0.001012
Target:  5'- gCCGGCCGGCCAAAGGUGCGAUCGCGGg -3'
miRNA:   3'- -GGCCGGCCGGUUUCCACGCUAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 29980 0.66 0.804159
Target:  5'- aCCGGggGGCgAuGGGUGCGAaaggaUgGCGGc -3'
miRNA:   3'- -GGCCggCCGgUuUCCACGCU-----AgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 856 0.66 0.777621
Target:  5'- -gGGCUGGCCAGGGGaaacaguaagGCuGAUUGCu- -3'
miRNA:   3'- ggCCGGCCGGUUUCCa---------CG-CUAGCGcc -5'
13265 5' -58.9 NC_003401.1 + 133487 0.67 0.768518
Target:  5'- gCuGCCGGCCAGcuGcGUGCGAggGCGu -3'
miRNA:   3'- gGcCGGCCGGUUu-C-CACGCUagCGCc -5'
13265 5' -58.9 NC_003401.1 + 772 0.67 0.768518
Target:  5'- gCuGCCGGCCAGcuGcGUGCGAggGCGu -3'
miRNA:   3'- gGcCGGCCGGUUu-C-CACGCUagCGCc -5'
13265 5' -58.9 NC_003401.1 + 132493 0.67 0.7593
Target:  5'- cCCGGuCCGGCCGAGcccGGcgGCGc-CGCGc -3'
miRNA:   3'- -GGCC-GGCCGGUUU---CCa-CGCuaGCGCc -5'
13265 5' -58.9 NC_003401.1 + 121152 0.67 0.749977
Target:  5'- gCGGCgGGCgCGGGGGgcGCGGggggCGCGc -3'
miRNA:   3'- gGCCGgCCG-GUUUCCa-CGCUa---GCGCc -5'
13265 5' -58.9 NC_003401.1 + 23815 0.67 0.740554
Target:  5'- aCCGGCgCGGCCAuuGGa-CGcUgGCGGc -3'
miRNA:   3'- -GGCCG-GCCGGUuuCCacGCuAgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 126966 0.67 0.740554
Target:  5'- gCGGCCGGcCCAGGGGUcCcacuUCGCa- -3'
miRNA:   3'- gGCCGGCC-GGUUUCCAcGcu--AGCGcc -5'
13265 5' -58.9 NC_003401.1 + 127114 0.67 0.740554
Target:  5'- gUCGGUCGG-CGAGGGUGCcuguUCGCc- -3'
miRNA:   3'- -GGCCGGCCgGUUUCCACGcu--AGCGcc -5'
13265 5' -58.9 NC_003401.1 + 18409 0.68 0.692272
Target:  5'- cCCGGUCGGUUucccAGGG-GUGGUCucgGCGGa -3'
miRNA:   3'- -GGCCGGCCGGu---UUCCaCGCUAG---CGCC- -5'
13265 5' -58.9 NC_003401.1 + 119076 0.71 0.496478
Target:  5'- gCGGCCGGCacCGGcguuaaccGGGUGCGuUgGCGGc -3'
miRNA:   3'- gGCCGGCCG--GUU--------UCCACGCuAgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 121029 0.71 0.534446
Target:  5'- aCgGGcCCGGCCGAGGGggGuCGAUCcUGGg -3'
miRNA:   3'- -GgCC-GGCCGGUUUCCa-C-GCUAGcGCC- -5'
13265 5' -58.9 NC_003401.1 + 118724 0.7 0.544103
Target:  5'- aCCGGCCGcGCCGcuug-GCGG-CGCGGc -3'
miRNA:   3'- -GGCCGGC-CGGUuuccaCGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 119780 0.7 0.57339
Target:  5'- aCGGCCuccgccaaucuGGCCGGAGGcgGCGca-GCGGc -3'
miRNA:   3'- gGCCGG-----------CCGGUUUCCa-CGCuagCGCC- -5'
13265 5' -58.9 NC_003401.1 + 16652 0.68 0.662667
Target:  5'- uCCGGa-GGUCAAGGcUGCGG-CGCGGc -3'
miRNA:   3'- -GGCCggCCGGUUUCcACGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 42183 0.68 0.662667
Target:  5'- gCCuGCCGGcCCAgcGcGUGcCGGUCGCGu -3'
miRNA:   3'- -GGcCGGCC-GGUuuC-CAC-GCUAGCGCc -5'
13265 5' -58.9 NC_003401.1 + 27890 0.68 0.672569
Target:  5'- gUCGGCguccugUGcGCCGGAGGUcuGCGA-CGCGGc -3'
miRNA:   3'- -GGCCG------GC-CGGUUUCCA--CGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 132682 0.66 0.821128
Target:  5'- -gGGCCccgGGCCcGGGGgGCGucggggCGCGGc -3'
miRNA:   3'- ggCCGG---CCGGuUUCCaCGCua----GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 89816 0.76 0.294553
Target:  5'- uCCGGCgGaGCUGAcGGUGCGG-CGCGGu -3'
miRNA:   3'- -GGCCGgC-CGGUUuCCACGCUaGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.