miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13265 5' -58.9 NC_003401.1 + 772 0.67 0.768518
Target:  5'- gCuGCCGGCCAGcuGcGUGCGAggGCGu -3'
miRNA:   3'- gGcCGGCCGGUUu-C-CACGCUagCGCc -5'
13265 5' -58.9 NC_003401.1 + 856 0.66 0.777621
Target:  5'- -gGGCUGGCCAGGGGaaacaguaagGCuGAUUGCu- -3'
miRNA:   3'- ggCCGGCCGGUUUCCa---------CG-CUAGCGcc -5'
13265 5' -58.9 NC_003401.1 + 11764 0.67 0.768518
Target:  5'- cCCGGCguUGGCUucgcGGUgGUGGUCGCGc -3'
miRNA:   3'- -GGCCG--GCCGGuuu-CCA-CGCUAGCGCc -5'
13265 5' -58.9 NC_003401.1 + 13674 0.7 0.583238
Target:  5'- cUCGGacaGGUCGcGGGccagGCGGUCGCGGu -3'
miRNA:   3'- -GGCCgg-CCGGUuUCCa---CGCUAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 14196 0.67 0.728173
Target:  5'- -gGGaCCGGCC--GGGUGCGcgaaucgauuggccgCGCGGc -3'
miRNA:   3'- ggCC-GGCCGGuuUCCACGCua-------------GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 15040 0.67 0.768518
Target:  5'- uCUGGCC-GCCAGgcGGGgcgugGCGcgCGCGc -3'
miRNA:   3'- -GGCCGGcCGGUU--UCCa----CGCuaGCGCc -5'
13265 5' -58.9 NC_003401.1 + 16652 0.68 0.662667
Target:  5'- uCCGGa-GGUCAAGGcUGCGG-CGCGGc -3'
miRNA:   3'- -GGCCggCCGGUUUCcACGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 18409 0.68 0.692272
Target:  5'- cCCGGUCGGUUucccAGGG-GUGGUCucgGCGGa -3'
miRNA:   3'- -GGCCGGCCGGu---UUCCaCGCUAG---CGCC- -5'
13265 5' -58.9 NC_003401.1 + 18442 0.67 0.731043
Target:  5'- gCGGCggCGGCCAcaAGGGUGUcucuuuuuauaGUCGUGGg -3'
miRNA:   3'- gGCCG--GCCGGU--UUCCACGc----------UAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 22336 0.67 0.7481
Target:  5'- gCGGCCGuGCCAAGGGcucaaaaUGCGAcuuagaaacacccUCGaCGu -3'
miRNA:   3'- gGCCGGC-CGGUUUCC-------ACGCU-------------AGC-GCc -5'
13265 5' -58.9 NC_003401.1 + 23815 0.67 0.740554
Target:  5'- aCCGGCgCGGCCAuuGGa-CGcUgGCGGc -3'
miRNA:   3'- -GGCCG-GCCGGUuuCCacGCuAgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 23931 0.67 0.768518
Target:  5'- aCCGGCgCGGCCcucg--GUGAUUGaCGGg -3'
miRNA:   3'- -GGCCG-GCCGGuuuccaCGCUAGC-GCC- -5'
13265 5' -58.9 NC_003401.1 + 27890 0.68 0.672569
Target:  5'- gUCGGCguccugUGcGCCGGAGGUcuGCGA-CGCGGc -3'
miRNA:   3'- -GGCCG------GC-CGGUUUCCA--CGCUaGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 29980 0.66 0.804159
Target:  5'- aCCGGggGGCgAuGGGUGCGAaaggaUgGCGGc -3'
miRNA:   3'- -GGCCggCCGgUuUCCACGCU-----AgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 42183 0.68 0.662667
Target:  5'- gCCuGCCGGcCCAgcGcGUGcCGGUCGCGu -3'
miRNA:   3'- -GGcCGGCC-GGUuuC-CAC-GCUAGCGCc -5'
13265 5' -58.9 NC_003401.1 + 46422 0.7 0.56358
Target:  5'- uCCGGCacCGGCauc-GGUGCGGUgauUGCGGu -3'
miRNA:   3'- -GGCCG--GCCGguuuCCACGCUA---GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 49269 0.7 0.553816
Target:  5'- aCCGGCgGGUCAAAaacGGcagaaUGCGcagugGUCGCGGu -3'
miRNA:   3'- -GGCCGgCCGGUUU---CC-----ACGC-----UAGCGCC- -5'
13265 5' -58.9 NC_003401.1 + 66879 0.66 0.786601
Target:  5'- gCGGCU-GUCAAAGGUGCGcgaGCGc -3'
miRNA:   3'- gGCCGGcCGGUUUCCACGCuagCGCc -5'
13265 5' -58.9 NC_003401.1 + 69476 0.69 0.622901
Target:  5'- aCGuGCCGGCaacuGGGGaacaUGCGAUaUGCGGg -3'
miRNA:   3'- gGC-CGGCCGgu--UUCC----ACGCUA-GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 72116 0.69 0.652741
Target:  5'- -aGGgCGGCCAGGGGUacgauaGCuGGUCGUGa -3'
miRNA:   3'- ggCCgGCCGGUUUCCA------CG-CUAGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.