Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13279 | 3' | -53.8 | NC_003409.1 | + | 131955 | 0.69 | 0.850293 |
Target: 5'- ----gGCCCAGCUGGuaa-ACaCCACCg -3' miRNA: 3'- ccauaUGGGUCGACCcaagUG-GGUGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 130915 | 0.72 | 0.711495 |
Target: 5'- cGGUGcUGCCCAGCUGGG----CCCAg- -3' miRNA: 3'- -CCAU-AUGGGUCGACCCaaguGGGUgg -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 130745 | 0.75 | 0.536493 |
Target: 5'- aGGUAcucucccuggGCCCAGCUGGGcagCACCguCCc -3' miRNA: 3'- -CCAUa---------UGGGUCGACCCaa-GUGGguGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 128069 | 0.67 | 0.935555 |
Target: 5'- aGGg--GCCCAuGCgGGGcUCugCUGCCc -3' miRNA: 3'- -CCauaUGGGU-CGaCCCaAGugGGUGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 128044 | 0.66 | 0.961167 |
Target: 5'- ----gGCgCGGUUGGGggUGCCCGCg -3' miRNA: 3'- ccauaUGgGUCGACCCaaGUGGGUGg -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 123956 | 0.66 | 0.94505 |
Target: 5'- ----cGCCUAGcCUGGGaagcuagUCACCC-CCu -3' miRNA: 3'- ccauaUGGGUC-GACCCa------AGUGGGuGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119397 | 0.95 | 0.038809 |
Target: 5'- aGGUAUACCCAGCUGGGUcUACCCAgCu -3' miRNA: 3'- -CCAUAUGGGUCGACCCAaGUGGGUgG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119326 | 0.75 | 0.566972 |
Target: 5'- cGUAaACCCGGCUGGGUaaAUCCAgCu -3' miRNA: 3'- cCAUaUGGGUCGACCCAagUGGGUgG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119237 | 0.88 | 0.109362 |
Target: 5'- gGGUAgACCCAGCUGGGUaUACCUACUg -3' miRNA: 3'- -CCAUaUGGGUCGACCCAaGUGGGUGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119196 | 0.76 | 0.506605 |
Target: 5'- cGUAUACCCAGCUGuGUUUACgCAgCg -3' miRNA: 3'- cCAUAUGGGUCGACcCAAGUGgGUgG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119166 | 0.71 | 0.761087 |
Target: 5'- uGGauuUACCCAGCcGGGUUUACgCAgCu -3' miRNA: 3'- -CCau-AUGGGUCGaCCCAAGUGgGUgG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119159 | 0.69 | 0.849489 |
Target: 5'- aGUAUAUccauuuauggaaaCCAGCUGGG-UCACuCUACUg -3' miRNA: 3'- cCAUAUG-------------GGUCGACCCaAGUG-GGUGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 119067 | 0.67 | 0.919468 |
Target: 5'- uGGUAUuCCCAGCUGaGGUU-GCCUu-- -3' miRNA: 3'- -CCAUAuGGGUCGAC-CCAAgUGGGugg -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 118295 | 0.7 | 0.807736 |
Target: 5'- aGGUu--CCCggggaggaGGCUGGGgugCGCCgCGCCg -3' miRNA: 3'- -CCAuauGGG--------UCGACCCaa-GUGG-GUGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 113738 | 0.68 | 0.894591 |
Target: 5'- uGGUuuggaugagGCCCAGCUGacg--GCCCACCg -3' miRNA: 3'- -CCAua-------UGGGUCGACccaagUGGGUGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 113570 | 0.72 | 0.70133 |
Target: 5'- cGGUGgGCCguCAGCUGGGccUCAUCCaaACCa -3' miRNA: 3'- -CCAUaUGG--GUCGACCCa-AGUGGG--UGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 109299 | 0.71 | 0.741536 |
Target: 5'- uGUcUACCUAGCUGGGcgCGCCguCUu -3' miRNA: 3'- cCAuAUGGGUCGACCCaaGUGGguGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 108319 | 0.67 | 0.925077 |
Target: 5'- cGUGUGCCauuuugcGCUGGGUUUcCUCGCg -3' miRNA: 3'- cCAUAUGGgu-----CGACCCAAGuGGGUGg -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 90403 | 0.71 | 0.77069 |
Target: 5'- uGUGUACUUAGCUGGGg-CACUCgagGCCc -3' miRNA: 3'- cCAUAUGGGUCGACCCaaGUGGG---UGG- -5' |
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13279 | 3' | -53.8 | NC_003409.1 | + | 81279 | 0.69 | 0.873443 |
Target: 5'- aGGUGgGCUUAGUgGGGgaacUCugCCGCCu -3' miRNA: 3'- -CCAUaUGGGUCGaCCCa---AGugGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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