miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13280 3' -58 NC_003409.1 + 119818 0.66 0.825344
Target:  5'- -gCGCCCGGGuGCacGGGGUcaccUCCAGGUCa -3'
miRNA:   3'- ugGUGGGUCUcCG--CUCUA----AGGUCCGG- -5'
13280 3' -58 NC_003409.1 + 23191 0.66 0.825344
Target:  5'- -gCGCCCGGGuGCacGGGGUcaccUCCAGGUCa -3'
miRNA:   3'- ugGUGGGUCUcCG--CUCUA----AGGUCCGG- -5'
13280 3' -58 NC_003409.1 + 27754 0.66 0.825344
Target:  5'- uGCCACCC--GGGCGAaaacaagCCGGGUa -3'
miRNA:   3'- -UGGUGGGucUCCGCUcuaa---GGUCCGg -5'
13280 3' -58 NC_003409.1 + 73915 0.66 0.815961
Target:  5'- cCCAaCCAGAagccucgGGCGaAGAgcUUCCGGGCg -3'
miRNA:   3'- uGGUgGGUCU-------CCGC-UCU--AAGGUCCGg -5'
13280 3' -58 NC_003409.1 + 87939 0.66 0.811629
Target:  5'- cGCCguGCCCGGuAGGCcugcaccagaugaguGAGggUCUgaaGGGCCg -3'
miRNA:   3'- -UGG--UGGGUC-UCCG---------------CUCuaAGG---UCCGG- -5'
13280 3' -58 NC_003409.1 + 51666 0.66 0.808135
Target:  5'- cACCACCaaccGGCGGGAUgacCCuGGCg -3'
miRNA:   3'- -UGGUGGgucuCCGCUCUAa--GGuCCGg -5'
13280 3' -58 NC_003409.1 + 128643 0.66 0.790294
Target:  5'- aACUGCUCcuggguagaAGAGGCGuuGUUCCAGGgUg -3'
miRNA:   3'- -UGGUGGG---------UCUCCGCucUAAGGUCCgG- -5'
13280 3' -58 NC_003409.1 + 109834 0.66 0.787568
Target:  5'- cGCCGCCCaagacgccgcggcgGGAGGCGGuGGcgCCcGGCg -3'
miRNA:   3'- -UGGUGGG--------------UCUCCGCU-CUaaGGuCCGg -5'
13280 3' -58 NC_003409.1 + 22147 0.66 0.781158
Target:  5'- aACCGCCCcugcggucacGGGGGCGuGGAUUUUuugggguguuGGCCu -3'
miRNA:   3'- -UGGUGGG----------UCUCCGC-UCUAAGGu---------CCGG- -5'
13280 3' -58 NC_003409.1 + 48796 0.67 0.77189
Target:  5'- uUgGgCCAGGGGUcacAGuUUCCAGGCCg -3'
miRNA:   3'- uGgUgGGUCUCCGc--UCuAAGGUCCGG- -5'
13280 3' -58 NC_003409.1 + 107778 0.67 0.77189
Target:  5'- cACgCGCCCAGuccGGCGAuuUgcagCAGGCCa -3'
miRNA:   3'- -UG-GUGGGUCu--CCGCUcuAag--GUCCGG- -5'
13280 3' -58 NC_003409.1 + 121361 0.67 0.761553
Target:  5'- uACUGCCCGGuuccaccAGGCG-GcgUUguGGCCa -3'
miRNA:   3'- -UGGUGGGUC-------UCCGCuCuaAGguCCGG- -5'
13280 3' -58 NC_003409.1 + 74578 0.67 0.756808
Target:  5'- uCCA-CCAGaAGGUGAcGGUauauccgccggagacUCCGGGCCg -3'
miRNA:   3'- uGGUgGGUC-UCCGCU-CUA---------------AGGUCCGG- -5'
13280 3' -58 NC_003409.1 + 24229 0.67 0.733672
Target:  5'- aGCCACCCAuguucuGGGGCGcgccagcGGUgggCgGGGCCc -3'
miRNA:   3'- -UGGUGGGU------CUCCGCu------CUAa--GgUCCGG- -5'
13280 3' -58 NC_003409.1 + 52575 0.67 0.724861
Target:  5'- gGCgGCCaAGGGGCGGGGacguggcagcucuuaUCCAGGCa -3'
miRNA:   3'- -UGgUGGgUCUCCGCUCUa--------------AGGUCCGg -5'
13280 3' -58 NC_003409.1 + 108619 0.68 0.714004
Target:  5'- gGCCACCaUAGAcacGGUGGccggCCAGGCCc -3'
miRNA:   3'- -UGGUGG-GUCU---CCGCUcuaaGGUCCGG- -5'
13280 3' -58 NC_003409.1 + 111827 0.68 0.704062
Target:  5'- uUUugCCAGAGGgGGGuUUCCucgcgucGGCCa -3'
miRNA:   3'- uGGugGGUCUCCgCUCuAAGGu------CCGG- -5'
13280 3' -58 NC_003409.1 + 43983 0.68 0.694059
Target:  5'- cUCAgUCAGGGGCGuAGAaUCCccGGCCa -3'
miRNA:   3'- uGGUgGGUCUCCGC-UCUaAGGu-CCGG- -5'
13280 3' -58 NC_003409.1 + 105879 0.69 0.643452
Target:  5'- gAUCGCCUcgcgugAGAGG-GAGAcgUCCAuGGCCg -3'
miRNA:   3'- -UGGUGGG------UCUCCgCUCUa-AGGU-CCGG- -5'
13280 3' -58 NC_003409.1 + 128529 0.69 0.643452
Target:  5'- uGCCGugUCCAGuaGGGgGAGAUgucacuUCCAGGCa -3'
miRNA:   3'- -UGGU--GGGUC--UCCgCUCUA------AGGUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.