Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 126868 | 0.69 | 0.909879 |
Target: 5'- cGGUGGaGGUAAagGUGUUGCgGgAGCGg -3' miRNA: 3'- -CCACC-CCGUUuaCACAGUGgU-UCGCg -5' |
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13281 | 3' | -52.3 | NC_003409.1 | + | 131268 | 0.67 | 0.966828 |
Target: 5'- aGGUGGGGCAcgaaaa----CAGGCGCa -3' miRNA: 3'- -CCACCCCGUuuacacagugGUUCGCG- -5' |
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13281 | 3' | -52.3 | NC_003409.1 | + | 131372 | 0.69 | 0.909879 |
Target: 5'- aGUGGGuGCAGGggagGcGUCACCAGGUu- -3' miRNA: 3'- cCACCC-CGUUUa---CaCAGUGGUUCGcg -5' |
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13281 | 3' | -52.3 | NC_003409.1 | + | 133477 | 0.66 | 0.979944 |
Target: 5'- cGGUGaGGGCccccUGUGUCugUccgccuggaaacaGGGUGCu -3' miRNA: 3'- -CCAC-CCCGuuu-ACACAGugG-------------UUCGCG- -5' |
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13281 | 3' | -52.3 | NC_003409.1 | + | 133861 | 0.71 | 0.844122 |
Target: 5'- aGGUGGGugugguucuaGCAGGgucUGUGUgauuuuggaCACCAGGUGCc -3' miRNA: 3'- -CCACCC----------CGUUU---ACACA---------GUGGUUCGCG- -5' |
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13281 | 3' | -52.3 | NC_003409.1 | + | 134670 | 0.66 | 0.969657 |
Target: 5'- uGGUGGaGGC--GUGuUGUCGcCCAAGauacuaGCa -3' miRNA: 3'- -CCACC-CCGuuUAC-ACAGU-GGUUCg-----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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