miRNA: 3'- ggaGGUCGUGC-GUCU-----CGuAGGUUGUU- -5'
miRNA: 3'- -GGAG-GUC-GUGCGucUCGu---AGGUUGUU- -5'
miRNA: 3'- ggAGGUCGUg-------CGUCUCGUAGGUUGUU- -5'
miRNA: 3'- ggAGGUCGugCGUCUCG---UAGGU--UGUu -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13282 | 5' | -54.3 | NC_003409.1 | + | 117691 | 0.68 | 0.831282 |
|
Target: 5'- --aCCAGCGCGaCGGAaguugGCcUCCAGCAAa -3' miRNA: 3'- ggaGGUCGUGC-GUCU-----CGuAGGUUGUU- -5' |
|||||||
| 13282 | 5' | -54.3 | NC_003409.1 | + | 119829 | 0.66 | 0.930196 |
|
Target: 5'- cUCUCuCAGuCGCGCcuAGCugcuUCCAACAGa -3' miRNA: 3'- -GGAG-GUC-GUGCGucUCGu---AGGUUGUU- -5' |
|||||||
| 13282 | 5' | -54.3 | NC_003409.1 | + | 130223 | 0.67 | 0.864196 |
|
Target: 5'- -aUCCAGCGucgccuuaGCAGAGUGUCCAGUAGa -3' miRNA: 3'- ggAGGUCGUg-------CGUCUCGUAGGUUGUU- -5' |
|||||||
| 13282 | 5' | -54.3 | NC_003409.1 | + | 130639 | 0.67 | 0.900282 |
|
Target: 5'- -gUCUGGCugGCAGGGUcucAUCCGcgGCAu -3' miRNA: 3'- ggAGGUCGugCGUCUCG---UAGGU--UGUu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home