miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13283 3' -55 NC_003409.1 + 133740 0.66 0.939133
Target:  5'- gGCGuucGGGAuCCacggaGCGUACACCCACguCCa -3'
miRNA:   3'- -UGCc--UCCUuGGa----UGCAUGUGGGUG--GG- -5'
13283 3' -55 NC_003409.1 + 133345 0.71 0.73215
Target:  5'- cACGGAuGGACCgg---ACACCUACCCu -3'
miRNA:   3'- -UGCCUcCUUGGaugcaUGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 131696 0.72 0.661594
Target:  5'- gGCGGccAGGGACuaccgCUGCGUggcACACCCACUg -3'
miRNA:   3'- -UGCC--UCCUUG-----GAUGCA---UGUGGGUGGg -5'
13283 3' -55 NC_003409.1 + 128805 0.66 0.929143
Target:  5'- gAUGGAcaccccGuGAACCguCGUGCuuACCCACCCc -3'
miRNA:   3'- -UGCCU------C-CUUGGauGCAUG--UGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 124081 0.66 0.925958
Target:  5'- uUGGAGGAguaAaggcaggccccguguCCUGCuUGC-CCCACCCu -3'
miRNA:   3'- uGCCUCCU---U---------------GGAUGcAUGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 121358 0.68 0.849474
Target:  5'- -aGGGGGAguuugACCUAgGUAguCCCugguGCCCu -3'
miRNA:   3'- ugCCUCCU-----UGGAUgCAUguGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 119655 0.69 0.816136
Target:  5'- cUGGAGGuGACCc-CGUGCACCCgggcGCUCu -3'
miRNA:   3'- uGCCUCC-UUGGauGCAUGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 118924 0.67 0.906278
Target:  5'- aAUGGgagcGGGAugCUAgGUccACGCUCACCUc -3'
miRNA:   3'- -UGCC----UCCUugGAUgCA--UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 118760 0.66 0.927561
Target:  5'- cACGGAGGAcggAUCUcuuggauuuacACGUaucgaggagcggugGCACCCcaggaACCCg -3'
miRNA:   3'- -UGCCUCCU---UGGA-----------UGCA--------------UGUGGG-----UGGG- -5'
13283 3' -55 NC_003409.1 + 118578 0.69 0.798427
Target:  5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCaggaACCCg -3'
miRNA:   3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 118533 0.69 0.833173
Target:  5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaggaACCCg -3'
miRNA:   3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG-----UGGG- -5'
13283 3' -55 NC_003409.1 + 118487 0.66 0.923787
Target:  5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaGCCUc -3'
miRNA:   3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG--UGGG- -5'
13283 3' -55 NC_003409.1 + 118304 0.69 0.798427
Target:  5'- -gGGAGGAGgCUgGgGUGCGCCgCGCCg -3'
miRNA:   3'- ugCCUCCUUgGA-UgCAUGUGG-GUGGg -5'
13283 3' -55 NC_003409.1 + 115431 0.66 0.91819
Target:  5'- -aGGAGGAgGCC-ACcgGC-CCCACCCc -3'
miRNA:   3'- ugCCUCCU-UGGaUGcaUGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 114796 0.66 0.923787
Target:  5'- uGCaGAGuGGucACCUGCccugcuccACACCCACCCc -3'
miRNA:   3'- -UGcCUC-CU--UGGAUGca------UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 114579 0.74 0.569498
Target:  5'- uGCGGgugucgcgcuuuGGGGGCCUGCcaGC-CCCACCCc -3'
miRNA:   3'- -UGCC------------UCCUUGGAUGcaUGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 110877 0.66 0.923787
Target:  5'- aACGu-GGAACuCU-CGUGCugCgGCCCg -3'
miRNA:   3'- -UGCcuCCUUG-GAuGCAUGugGgUGGG- -5'
13283 3' -55 NC_003409.1 + 109859 0.66 0.939133
Target:  5'- gGCGGuGGcGCCcgGCGcaacACugCCACCg -3'
miRNA:   3'- -UGCCuCCuUGGa-UGCa---UGugGGUGGg -5'
13283 3' -55 NC_003409.1 + 105751 0.67 0.899967
Target:  5'- cCGGuugaAGGAGCCcACGUucuCCCGCCa -3'
miRNA:   3'- uGCC----UCCUUGGaUGCAuguGGGUGGg -5'
13283 3' -55 NC_003409.1 + 105289 0.67 0.886647
Target:  5'- aACGGcGGAcgucacACCcgACa-ACACCCACCCc -3'
miRNA:   3'- -UGCCuCCU------UGGa-UGcaUGUGGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.