miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13283 3' -55 NC_003409.1 + 5304 0.69 0.816136
Target:  5'- -aGGAGGGAUgUu--UGCACCCGCUCg -3'
miRNA:   3'- ugCCUCCUUGgAugcAUGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 5474 0.67 0.912353
Target:  5'- uCGGAGGAcCCUACaUgaaauuccuaaACGCCCugCa -3'
miRNA:   3'- uGCCUCCUuGGAUGcA-----------UGUGGGugGg -5'
13283 3' -55 NC_003409.1 + 12265 0.67 0.906278
Target:  5'- uGCGG-GGGGCCggauUGcUGCACucguaCCACCCg -3'
miRNA:   3'- -UGCCuCCUUGGau--GC-AUGUG-----GGUGGG- -5'
13283 3' -55 NC_003409.1 + 13550 0.66 0.923787
Target:  5'- uGCGGAGG--CCaauagACGUcuCACCCgacGCCCg -3'
miRNA:   3'- -UGCCUCCuuGGa----UGCAu-GUGGG---UGGG- -5'
13283 3' -55 NC_003409.1 + 13662 0.75 0.500032
Target:  5'- cGCGGAGGAGCUaGCGU-CAaucaCCACCa -3'
miRNA:   3'- -UGCCUCCUUGGaUGCAuGUg---GGUGGg -5'
13283 3' -55 NC_003409.1 + 15688 0.66 0.939133
Target:  5'- -gGGAGGggUCU--GUACA-CCACCUu -3'
miRNA:   3'- ugCCUCCuuGGAugCAUGUgGGUGGG- -5'
13283 3' -55 NC_003409.1 + 22173 0.66 0.917617
Target:  5'- -gGGAGGGACCUGuaaccguCGUuaguaaCCGCCCc -3'
miRNA:   3'- ugCCUCCUUGGAU-------GCAugug--GGUGGG- -5'
13283 3' -55 NC_003409.1 + 23355 0.69 0.816136
Target:  5'- cUGGAGGuGACCc-CGUGCACCCgggcGCUCu -3'
miRNA:   3'- uGCCUCC-UUGGauGCAUGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 25901 0.7 0.741954
Target:  5'- -aGGGGGAcagcgcguaccgACCUAUGcGCGCCCACa- -3'
miRNA:   3'- ugCCUCCU------------UGGAUGCaUGUGGGUGgg -5'
13283 3' -55 NC_003409.1 + 30107 0.66 0.939133
Target:  5'- gACGGuGGGGCaaAUGUGuCACCaagCGCCCc -3'
miRNA:   3'- -UGCCuCCUUGgaUGCAU-GUGG---GUGGG- -5'
13283 3' -55 NC_003409.1 + 31268 1.12 0.002203
Target:  5'- cACGGAGGAACCUACGUACACCCACCCa -3'
miRNA:   3'- -UGCCUCCUUGGAUGCAUGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 34521 0.72 0.671816
Target:  5'- ---cAGGGACCUGCGcgGCgagcucauGCCCACCCu -3'
miRNA:   3'- ugccUCCUUGGAUGCa-UG--------UGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 42734 0.68 0.85733
Target:  5'- cAUGGAGGcGACCUugGaGCAacgaCCuuuCCCg -3'
miRNA:   3'- -UGCCUCC-UUGGAugCaUGUg---GGu--GGG- -5'
13283 3' -55 NC_003409.1 + 44289 0.75 0.462042
Target:  5'- cACGGAGG-AUCUAC-UGCACCCaACCUc -3'
miRNA:   3'- -UGCCUCCuUGGAUGcAUGUGGG-UGGG- -5'
13283 3' -55 NC_003409.1 + 49367 0.66 0.929143
Target:  5'- uACGGuAGGGcuCCUGgGUagcuAUGCCCACCg -3'
miRNA:   3'- -UGCC-UCCUu-GGAUgCA----UGUGGGUGGg -5'
13283 3' -55 NC_003409.1 + 51800 0.72 0.684039
Target:  5'- uUGGAGGAACUgcagaggcuggcGCGUgcuacgccggacccgGCACUCACCCg -3'
miRNA:   3'- uGCCUCCUUGGa-----------UGCA---------------UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 51929 0.66 0.939133
Target:  5'- -aGGcuccGGGAACCgUGCGUggagaaagccuAgACCCGCCUg -3'
miRNA:   3'- ugCC----UCCUUGG-AUGCA-----------UgUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 52154 0.74 0.559393
Target:  5'- cACGGGGGGugGCCUgugGCGUgugcGCGCUgGCCCc -3'
miRNA:   3'- -UGCCUCCU--UGGA---UGCA----UGUGGgUGGG- -5'
13283 3' -55 NC_003409.1 + 52387 0.66 0.937696
Target:  5'- uCGGAGGcuaguGCCUggauaagagcugccACGU-C-CCCGCCCc -3'
miRNA:   3'- uGCCUCCu----UGGA--------------UGCAuGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 65054 0.65 0.94377
Target:  5'- aGCGG-GGAaaagcACCaGCGU--AUCCGCCCu -3'
miRNA:   3'- -UGCCuCCU-----UGGaUGCAugUGGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.