miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13283 3' -55 NC_003409.1 + 44289 0.75 0.462042
Target:  5'- cACGGAGG-AUCUAC-UGCACCCaACCUc -3'
miRNA:   3'- -UGCCUCCuUGGAUGcAUGUGGG-UGGG- -5'
13283 3' -55 NC_003409.1 + 114796 0.66 0.923787
Target:  5'- uGCaGAGuGGucACCUGCccugcuccACACCCACCCc -3'
miRNA:   3'- -UGcCUC-CU--UGGAUGca------UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 128805 0.66 0.929143
Target:  5'- gAUGGAcaccccGuGAACCguCGUGCuuACCCACCCc -3'
miRNA:   3'- -UGCCU------C-CUUGGauGCAUG--UGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 65054 0.65 0.94377
Target:  5'- aGCGG-GGAaaagcACCaGCGU--AUCCGCCCu -3'
miRNA:   3'- -UGCCuCCU-----UGGaUGCAugUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 87181 0.71 0.702251
Target:  5'- gGCGGAGGGcgugGCCg----ACGCgCCACCCu -3'
miRNA:   3'- -UGCCUCCU----UGGaugcaUGUG-GGUGGG- -5'
13283 3' -55 NC_003409.1 + 118304 0.69 0.798427
Target:  5'- -gGGAGGAGgCUgGgGUGCGCCgCGCCg -3'
miRNA:   3'- ugCCUCCUUgGA-UgCAUGUGG-GUGGg -5'
13283 3' -55 NC_003409.1 + 119655 0.69 0.816136
Target:  5'- cUGGAGGuGACCc-CGUGCACCCgggcGCUCu -3'
miRNA:   3'- uGCCUCC-UUGGauGCAUGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 82949 0.69 0.833173
Target:  5'- gUGGAGGAACaaaugACGUGgGCCCAgaCg -3'
miRNA:   3'- uGCCUCCUUGga---UGCAUgUGGGUggG- -5'
13283 3' -55 NC_003409.1 + 100496 0.68 0.875337
Target:  5'- -gGGAGGGucaaGCCUACGUguGCACggggcucgucccgggCCaACCCa -3'
miRNA:   3'- ugCCUCCU----UGGAUGCA--UGUG---------------GG-UGGG- -5'
13283 3' -55 NC_003409.1 + 13550 0.66 0.923787
Target:  5'- uGCGGAGG--CCaauagACGUcuCACCCgacGCCCg -3'
miRNA:   3'- -UGCCUCCuuGGa----UGCAu-GUGGG---UGGG- -5'
13283 3' -55 NC_003409.1 + 105751 0.67 0.899967
Target:  5'- cCGGuugaAGGAGCCcACGUucuCCCGCCa -3'
miRNA:   3'- uGCC----UCCUUGGaUGCAuguGGGUGGg -5'
13283 3' -55 NC_003409.1 + 42734 0.68 0.85733
Target:  5'- cAUGGAGGcGACCUugGaGCAacgaCCuuuCCCg -3'
miRNA:   3'- -UGCCUCC-UUGGAugCaUGUg---GGu--GGG- -5'
13283 3' -55 NC_003409.1 + 13662 0.75 0.500032
Target:  5'- cGCGGAGGAGCUaGCGU-CAaucaCCACCa -3'
miRNA:   3'- -UGCCUCCUUGGaUGCAuGUg---GGUGGg -5'
13283 3' -55 NC_003409.1 + 5474 0.67 0.912353
Target:  5'- uCGGAGGAcCCUACaUgaaauuccuaaACGCCCugCa -3'
miRNA:   3'- uGCCUCCUuGGAUGcA-----------UGUGGGugGg -5'
13283 3' -55 NC_003409.1 + 93371 0.73 0.620552
Target:  5'- uGCGGAGGAugUUguggGCGUggcgACugCCGCCg -3'
miRNA:   3'- -UGCCUCCUugGA----UGCA----UGugGGUGGg -5'
13283 3' -55 NC_003409.1 + 86580 0.68 0.849474
Target:  5'- cCGGAGuGGCUaacggGCGUACGCC-GCCCg -3'
miRNA:   3'- uGCCUCcUUGGa----UGCAUGUGGgUGGG- -5'
13283 3' -55 NC_003409.1 + 115431 0.66 0.91819
Target:  5'- -aGGAGGAgGCC-ACcgGC-CCCACCCc -3'
miRNA:   3'- ugCCUCCU-UGGaUGcaUGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 110877 0.66 0.923787
Target:  5'- aACGu-GGAACuCU-CGUGCugCgGCCCg -3'
miRNA:   3'- -UGCcuCCUUG-GAuGCAUGugGgUGGG- -5'
13283 3' -55 NC_003409.1 + 51800 0.72 0.684039
Target:  5'- uUGGAGGAACUgcagaggcuggcGCGUgcuacgccggacccgGCACUCACCCg -3'
miRNA:   3'- uGCCUCCUUGGa-----------UGCA---------------UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 5304 0.69 0.816136
Target:  5'- -aGGAGGGAUgUu--UGCACCCGCUCg -3'
miRNA:   3'- ugCCUCCUUGgAugcAUGUGGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.